Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1074 a.a., SusC/RagA family TonB-linked outer membrane protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  377 bits (967), Expect = e-108
 Identities = 307/1090 (28%), Positives = 506/1090 (46%), Gaps = 122/1090 (11%)

Query: 124  QQQKVTGKVVDA-NNEPLIGVSVLEKGTTNGTITDFDGNYTLVVTGSNAVLQFSYVGYQT 182
            QQ  V+G V  A +N PL GVSV+ KGTT G  T+ DG+Y + V    AVL F ++GY+T
Sbjct: 23   QQLTVSGTVTGAEDNFPLPGVSVIVKGTTTGVSTNADGSYQINVPNQKAVLLFRFLGYET 82

Query: 183  LERAVAGKTAINITLKEDAQVLDEVVVTALGIKRSEKALSYNVQQVNADAVTTNKDPNFI 242
             E  V  +  +N+ L  D Q L EVVVTALGI R E++L Y+ QQV+ + +T  K+ N +
Sbjct: 83   KEVQVGNQAVLNVQLGADNQQLKEVVVTALGITREERSLGYSTQQVDGENLTLTKEQNVL 142

Query: 243  NSLSGKVAGVNINASS-SGVGGVSKVVMRGTKSIMQSSNALYVVDGVPMYSNANKVNGTE 301
             SL+G+VAGV ++ SS + +GG  ++ +RG  ++  +   L V+DG PM +     N  E
Sbjct: 143  GSLAGRVAGVQVSGSSGASMGGTQRIKIRGVNTLSGNDQPLIVIDGTPMAN----TNFAE 198

Query: 302  FSSKGNTEPIADINPEDIESMSVLTGAAAAALYGSDAANGAIIITTKKGKEGRVNITVNS 361
             S +     I DINP+DIES++VL G AA+ALYG    +G I+ITTKKG +G+V +  + 
Sbjct: 199  RSGQDYGNAIQDINPDDIESVNVLKGPAASALYGLRGQHGVIMITTKKGAQGKVRVEYSG 258

Query: 362  NVEFNAPLVMPRFQTRYGTGI----------GGVKDDNSSRSWGPKL---TEARYFGYNP 408
                         Q  YG G               +  +  SWGP++      +++ + P
Sbjct: 259  AYSVEKAGNFMPLQNTYGGGSTQKFSTLENGDPYVNQGADESWGPRMDGQLVRQFYSFYP 318

Query: 409  RD-----------------DYFQTGVIGTESVSFSTGSEKNQTYASAAAVNSKGIVPNNK 451
             D                 D+++ G     +++ S G   +    S    + +G+ PN  
Sbjct: 319  ADPDYGKLTPFVPHPDNIKDFYELGHTFNNNIAVSGGGANSTFRLSFNNTSIEGVTPNTW 378

Query: 452  YDRYNFNVRNTTSFLDDKMTLDVNASYILQKDRNMVNQGTYNNPLVGAYLFPRGNDWEDI 511
             DR N    N    +  K+ +  + +Y   + +    QG  N        F R  D E +
Sbjct: 379  LDRSNLGF-NGAMDVSKKIKVSTSLNYAYNQAQR-PGQGYDNGATYLTQWFQRSVDMERL 436

Query: 512  KMYERYDVARKIYTQYWPTGDGNMT------MQNPYWVNYRNLRENKKDRYMLGASLNYQ 565
            K Y+  D +   +    P G G ++        NPY+  Y N  ++K+DR+     L Y+
Sbjct: 437  KNYKYDDGSFLHWNIDNPNGAGVVSDLEPLYWNNPYFEAYENYSQDKRDRFFGNVGLTYE 496

Query: 566  ILDWLNVSGRVRLDN-SNNDYTEKAYASTNTQLTELSDRGLYGISRSYEKQLYADFLVSV 624
            ++D L +SG  R D  + N  T  A    + Q         + I +   +++  +F+   
Sbjct: 497  VMDGLKLSGFARSDMFTQNIDTRSARGGRSLQ--------DFSIGKYQNREMNYEFMGQY 548

Query: 625  NKTFGEKWSLQANMGGSFTDMRYDEMAVRGPIADDSKTFAGEKAGLTNGFYIQNLSTTKT 684
             K +GE  SL AN+G +     Y            S  +   + GL+   +    ++   
Sbjct: 549  TKYWGE-LSLNANVGANLLQQEY------------SYLYQSAEGGLSTPNFFNIAASIDR 595

Query: 685  SKMQSGWRE-QTQSIYASAEVGYQSTYYLTLTGRNDWPSQLAGRNSVNKSFFYPSVGMSV 743
             ++ S  RE + +S+Y    +GY+ T++L  + RND  S L      N S++YPS+  S 
Sbjct: 596  PEVSSYLREKEVKSVYGMVSLGYKDTWFLDASLRNDNSSTLP---EDNNSYWYPSISGSA 652

Query: 744  VLSELMPKLNKDYLSYWKIRGSFASVGTAFERYIANPLFA-WNTSIGQWSNLTDFPVYD- 801
            V SEL+       LS+ K+R S+A  G+  E Y  +  +A  NT   +   +    + D 
Sbjct: 653  VFSELVA---WSPLSFGKVRVSYAQAGSDLEPYQTSFNYAIGNTYSDEERTINTLYIPDK 709

Query: 802  -----LKPERTNSFEVGMNMRFLKN-FELDVTYYNAKTMNQTFN-PELPVGEYARIYIQT 854
                 +KP  ++SFE G++++FL++   ++ T+Y  +  NQ    P      YA   I  
Sbjct: 710  LNNPLIKPSFSHSFETGLDLKFLQDRIGMNFTWYQQRNRNQILTLPVSGASGYASTVINA 769

Query: 855  GAVRNQGLELALNYNNTWKDFTWNTGVTYSMNKNKILTLADNAINPITREKFSISSLNMG 914
            G + N+G E+ALN       FTW+ GV +S NK+ I  L  +    I    + I+S N  
Sbjct: 770  GLIENKGYEVALNAVPVAGKFTWDLGVNFSRNKSMIKELYSDGTMEI--NNYQIAS-NTY 826

Query: 915  GLGSTRFILKEGGSMGDIYSLMDLKRDANGAVYIDENNSVVTESLEANNYIKLGSVLPKG 974
               +      EG   G +     ++    G + +D  +  + E          GSVLP  
Sbjct: 827  SRVTVSVNATEGQPYGTLIGQAYMRDPDTGKILLDAQSLPLYEPNH-----NFGSVLPDY 881

Query: 975  NLAWRNNFSWKNINVAFLVSARLGGVVFSRTQAVLDNFGVSEASAAARDKGY-----VSV 1029
                 NNFS+  ++++ LV  ++GG  FS ++ +    G +  +AA  D+G      +S 
Sbjct: 882  TGGVTNNFSYGPLSLSALVDFQIGGQFFSWSRMLAVKTGQAVETAAMNDRGKNVRDPLSE 941

Query: 1030 NGNDRVNP-EGWYSVVAG----------------------GTAVPQYYIYSATNIRLQEA 1066
             G  +V    G  +++ G                      GT V + ++Y A+ ++L+E 
Sbjct: 942  GGGVKVTGIYGPGTIIDGEDVSGKEVSTYVDAKSYFRTKLGTQVYEEWLYDASYVKLREL 1001

Query: 1067 SIGYTIPRKWLGNV--CDIKVSLIGRNLWMIYNKAP--FDPESVASTDNFYQGIDYFMMP 1122
             +GYT+    L  +    + + L+ RN +MI+ KAP   +P  +A+       ++   + 
Sbjct: 1002 RLGYTLGSNLLSKLPFSSVNIGLVSRNPFMIWQKAPKGLNPSELANGSEPISWLETGQLV 1061

Query: 1123 SLRNIGFNLS 1132
            S+R+ G +L+
Sbjct: 1062 SVRSFGLSLN 1071