Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1160 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  408 bits (1049), Expect = e-117
 Identities = 328/1173 (27%), Positives = 557/1173 (47%), Gaps = 139/1173 (11%)

Query: 41   LTIRISNSSLGTVIKQIQSQSKYQFFY-DDNLASMRIESLNVKDVSLVEVLDKALKGKNV 99
            + ++  N SL    + I+ +++++F Y +++L      SL      L  +L+     K++
Sbjct: 49   IMLQEQNYSLEGFFRTIEEKTEFKFAYANEHLDLNDTFSLRPGRHDLKSLLEHLSYSKHL 108

Query: 100  VY-KIDDNVVYLSKANASSSTKSTQQQ-QKVTGKVVDANNEPLIGVSVLEKGTTNGTITD 157
             + +ID N+V   +   +     T Q  +KV+G V+D   EPL G ++L KG++ GT+TD
Sbjct: 109  RFERIDKNIVVRKQRKDTFVQGGTAQVVKKVSGSVLDEKGEPLPGATILAKGSSTGTVTD 168

Query: 158  FDGNYTLVVTGSNAVLQFSYVGYQTLERAVAGKTAINITLKEDAQVLDEVVVTALGIKRS 217
             DG ++L V      +  S++GY+T E ++ G   ++I L      L+EV+VTALGI+R+
Sbjct: 169  MDGKFSLEVPDDIQSILVSFIGYETKEVSIDGTAVLDIRLIPSESSLNEVIVTALGIRRN 228

Query: 218  EKALSYNVQQVNADAVTTNKDPNFINSLSGKVAGVNINASSSGVGGVSKVVMRGTKSIMQ 277
            E  + Y  Q V+++ ++T   PN+ N L GK+AG+NI +  +G      + +RG  S+  
Sbjct: 229  ENEVGYAEQTVDSELLSTAMAPNWSNGLQGKIAGLNIISGGTGPINSQSIQLRGATSLAP 288

Query: 278  -SSNALYVVDGVPMYSNANKVNGTEFSSKGNTEP------IADINPEDIESMSVLTGAAA 330
              +NAL VVDGVPM  +A        +  G   P      I+++N +DIES++VL G AA
Sbjct: 289  GGNNALIVVDGVPMNQHATAFGDGVDAGYGTEAPVDYGNAISELNQDDIESVTVLKGPAA 348

Query: 331  AALYGSDAANGAIIITTKKGKEG-RVNITVNSNVEFNAPLVMPRFQTRYGTGIGGVKDD- 388
            AALYGS A NGA+IITTK G++G R+ ++V+S   F+ P   P +Q +YG G   V++D 
Sbjct: 349  AALYGSRAGNGALIITTKSGRKGQRLGVSVSSTAIFDVPTNWPNYQYQYGAGNYAVRNDE 408

Query: 389  ----------------NSSRSWGPKLTEARYFGYNP------------------RDDYFQ 414
                            N  ++WG K     ++ Y+P                    D++ 
Sbjct: 409  GEQFYSYGNSEDGISTNVPQAWGAKFDGQYFYQYDPATQAQGSERTLWRPYENNMKDFYN 468

Query: 415  TGVIGTESVSFSTGSEKNQTYASAAAVNSKGIVPNNKYDRYNFNVRNTTSFLDDKMTLDV 474
            TG     SV+   G +K     +    ++K +VPN  YD+ + ++ N    + +++ +  
Sbjct: 469  TGTTFINSVALEGGDDKGAMRLNLTHADNKYLVPNTGYDKNSISL-NANYQVSERIKVST 527

Query: 475  NASYILQKDRNMVNQGTYNNPLVGAYLFPRGN---DWEDIKMYERYDVARKIYTQYWPTG 531
              +Y  +   N+   G  N  L    +F   N   DW               Y   W  G
Sbjct: 528  VLNYNQRTSDNLPGFGLSNGSLGYFMMFLMPNVDIDW---------------YRPIWQNG 572

Query: 532  DGNMTM--------QNPYWVNYRNLRENKKDRYMLGASLNYQILDWLNVSGRVRLDN-SN 582
              N+           NPY+++Y +L + K ++ +   S + ++ D L+V GR+ L++ S 
Sbjct: 573  QENLQQLNPFSQWSSNPYFLSYVDLNKLKSNQIVGNVSADIKLTDHLSVMGRLSLNSLSQ 632

Query: 583  NDYTEKAYASTNTQLTELSDRGLYGISRSYEKQLYADFLVSVNKTFGEKWSLQANMGGSF 642
               +E+ Y+S      +   RG YG      +++ ADFL++   T  E    +   GG+ 
Sbjct: 633  LRESERGYSS------KKHPRGYYGRQDISNQEINADFLLTYKNTISEIIDYEVRAGGNR 686

Query: 643  TDMRYDEMAVRGPIADDSKTFAGEKAGLTNGFYIQNLSTTKTSKMQSGWREQTQSIYASA 702
                   M  R  ++      +     L+NG  +  + T    K          S+Y  A
Sbjct: 687  M-----SMVNRNVMSSVDALISPGVYNLSNGVNLPLVETRDALK-------DINSLYGMA 734

Query: 703  EVGYQSTYYLTLTGRNDWPSQLAGRNSVNKSFFYPSVGMSVVLSELMPKLNKDYLSYWKI 762
               ++    + +TGRNDW S L   N+   S+FYPS+  S ++S +     K  +S+ K 
Sbjct: 735  TFSWKDNIIVDVTGRNDWSSTLPEENN---SYFYPSISSSFLVSNMFQLPEK--ISFLKY 789

Query: 763  RGSFASVGTAFERYIANPLFAWNTSIGQWSNLTDFPVYD--LKPERTNSFEVGMNMRFLK 820
            R S+A VG+    Y  +  +A ++     S +    +++  LKPE T+ FE G   +  +
Sbjct: 790  RVSYAQVGSDANPYQTSKYYAQSSFPS--SAIVPGALFNTHLKPEITSGFETGFLFKMFE 847

Query: 821  N-FELDVTYYNAKTMNQ--TFNPELPVGEYARIYIQTGAVRNQGLELALNYNNTW-KDFT 876
            N   +D TYY + T NQ  T   ++  G  +R+ I  G VRN+G+EL L     + KDF 
Sbjct: 848  NRLGVDFTYYASTTKNQILTLPSDIAAGYSSRV-INAGEVRNRGVELILTATPIFNKDFK 906

Query: 877  WNTGVTYSMNKNKILTLADNAINPITREKFSISSLNMGGLGSTRFILKEGGSMGDIYSLM 936
            W+    +SMN+N+ILTL DN       E+ +++ +  G +     I   GG+  DIY   
Sbjct: 907  WDITGNWSMNRNEILTLTDNL------ERQTLARVWQGYM-----IATVGGTTSDIYGTK 955

Query: 937  DLKRDANGAVYIDENNSVVTESLEANNYIKLGSVLPKGNLAWRNNFSWKNINVAFLVSAR 996
             ++  A   VY   +N V T +     YI  G+  P       N F +KN   +  V  +
Sbjct: 956  FVRDPAGNIVY---SNGVPTRT-STQEYI--GNAAPDWKYGLTNTFVYKNFRASLTVDGQ 1009

Query: 997  LGGVVFSRTQAVLDNFGVSEASAAARDKGYVSVNGNDRVNPEGWYSVVAGGTAVPQYY-- 1054
            +GG+++S T       G +  +   R++G++  +G  + N +G YS          YY  
Sbjct: 1010 MGGLIYSGTYNRASWAGTTTNTIPGREEGFIVGDGVVQ-NEDGSYSSNTVEADPQAYYVQ 1068

Query: 1055 --------IYSATNIRLQEASIGYTIPRKWLG--NVCDIKVSLIGRNLWMIYNKAP-FDP 1103
                    ++ AT ++++E +  Y  P K      + ++ + + GRNL  +++K P +DP
Sbjct: 1069 RHQTTEPGVFDATFLKIRELTFNYNFPNKLTQPLGIYNLSLGVYGRNL-AVFDKFPMWDP 1127

Query: 1104 ES-VASTDNFYQGIDYFMMPSLRNIGFNLSFKF 1135
            E+   +++ F   ++   MP   + G N+  KF
Sbjct: 1128 EAGTMNSNGFVPSMEVTPMPFSASYGCNVKLKF 1160