Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1031 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  379 bits (972), Expect = e-109
 Identities = 308/1043 (29%), Positives = 490/1043 (46%), Gaps = 121/1043 (11%)

Query: 124  QQQKVTGKVVDANN-EPLIGVSVLEKGTTNGTITDFDGNYTLVVTGSNAVLQFSYVGYQT 182
            Q+  +TG V  A + EPL GVSVL +GT +GT+TD DGNY++ V      L FSY+GY T
Sbjct: 24   QEVTITGTVTTAEDGEPLPGVSVLLQGTNSGTVTDLDGNYSIDVADREGTLVFSYLGYVT 83

Query: 183  LERAVAGKTAINITLKEDAQVLDEVVVTALGIKRSEKALSYNVQQVNADAVTTNKDPNFI 242
               A+  +T I++ ++ED   + E VVTA  I +SEK+L Y  Q V +D +T  K PN +
Sbjct: 84   QTLAIQNRTTIDVVMEEDVSEMGEFVVTAFDIDQSEKSLGYAAQVVESDEITKTKQPNLV 143

Query: 243  NSLSGKVAGVNINASSSGVGGVSKVVMRGTKSIMQSSN--ALYVVDGVPMYSNANKVNGT 300
            N+L G+VAGV I  S    G  +++V+RG  S+  ++N   L+VVDGVP+ ++  +   T
Sbjct: 144  NALQGQVAGVQITNSGGAPGQSARIVIRGINSLDPNANNQPLFVVDGVPINNSTIESGNT 203

Query: 301  EFSSKGNTEPIADINPEDIESMSVLTGAAAAALYGSDAANGAIIITTKKGKEGRVNITVN 360
                +G +   ADINP DIESMSVL GAAA ALYG  AANGA+II TK+G+ G+  I +N
Sbjct: 204  ---PRGMSNRAADINPNDIESMSVLKGAAATALYGVRAANGAVIIRTKRGQAGQTRININ 260

Query: 361  SNVEFNAPLVMPRFQTRYGTGIGGVKDDNSS-RSWGPKLTEARYF--GYNPRDDY---FQ 414
            S++  +  + +P  Q ++G G  G  D +S   +WG  + E      G+  +D++   F 
Sbjct: 261  SSIGMDKLVKLPNLQDQFGQGFSGEYDPSSFWPAWGAPIAEVAETVPGHKYQDNWNRAFD 320

Query: 415  TGVIGTESVSFSTGSEKNQTYASAAAVNSKGIVPNNKYDRYNFNVRNTTSFLDDKMTLDV 474
            TG+    ++SFS GSE    Y S   ++ +GI+P + + R       TT+    K++  V
Sbjct: 321  TGLNIDNNISFSGGSENATFYGSFGRLDQQGIIPFSDWSR-------TTA----KLSGSV 369

Query: 475  NASYILQKDRNMVNQGTYNNPLVGAYLFPRGNDW---EDIKMYERYDVARKIYTQYWPTG 531
             AS       +M    +  N +       R   W   +D++ Y   D   K Y       
Sbjct: 370  KASEKFDFSGSMNFSNSGGNRVPHDRFMERMMYWAETQDVRDYINPDGTMKTY------- 422

Query: 532  DGNMTMQNPYWVNYRNLRENKKDRYMLGASLNYQILDWLNVSGRVRLDNSNNDYTEKAYA 591
             GN    NP +       E+  +R +   +LNY+  DWL +S R+  D S++  TE    
Sbjct: 423  -GN---TNPIYDARFATYEDNVNRIIGNINLNYRPTDWLTLSYRLGTDVSSDSRTEITPG 478

Query: 592  STNTQ-LTELSDRGLYGISRSYEKQLYADFLVSVNKTFGEKWSLQANMGGSFTDMRYDEM 650
                     LS  G    +R   + L ++F +++ K F   W+    +G    + RYD +
Sbjct: 479  PKGIDGEVALSSTGFIEETRINARDLTSNFYITLQKQFSGDWNTTLRLGNDIFERRYDRV 538

Query: 651  AVRGPIADDSKTFAGEKAGLTNGFYIQNLSTTKTSKMQSGWREQTQSIYASAEVGYQSTY 710
               G     S     E   L N        T +    Q    ++    Y    V Y++  
Sbjct: 539  VSTG-----SDFVIPEFYNLNN--------TAQIFASQDSQIKRLVGFYGDLTVDYRNFL 585

Query: 711  YLTLTGRNDWPSQLAGRNSVNKSFFYPSVGMSVVLSELMPKLNKDYLSYWKIRGSFASVG 770
            ++ LTGRND  S L      N SFFYPSV +S V SE M      + ++ KIR S+A VG
Sbjct: 586  FINLTGRNDISSTLP---KDNNSFFYPSVNLSYVFSENMDM--PSWFTFGKIRASWAQVG 640

Query: 771  TAFE------RYIANPLFAWNTSIGQWSNLTDFPVYDLKPERTNSFEVGMNMRFLK-NFE 823
               +       +++  +F  N  +G +S  + F    LKPE T S E G  + FL    +
Sbjct: 641  KDTQPHILGATFVSPSVFPLNGQVG-FSRNSTFGDPGLKPELTTSIEFGTQLSFLDGRLD 699

Query: 824  LDVTYYNAKTMNQTFNPELPVGE---YARIYIQTGAVRNQGLELALNYN-NTWKDFTWNT 879
            LDVTY+ + + +      +P+ +   ++      G ++N G+EL +  +     DF W  
Sbjct: 700  LDVTYFKSNSKDMII--PVPISDATGFSSYITNAGEIQNSGIELVVGADIIETSDFKWTV 757

Query: 880  GVTYSMNKNKILTLADNAINPITREKFSISSLNMGGLGSTRFILK--EGGSMGDIYSLMD 937
                + NKN+++ + +     I   +F        G G +   +K  EG + G++Y    
Sbjct: 758  TGNMTKNKNEVVGIREGIDEIIVGSQF--------GYGGSTVTMKLIEGDAYGNMYGTSY 809

Query: 938  LKRDANGAVYIDENNSVVTESL-----------EANNYIKLGSVLPKGNLAWRNNFSWKN 986
             +  A      D  N +   SL              + + LG+ +PK     +N FS+KN
Sbjct: 810  QRYGA------DPENPMAQSSLPRVIGADGFPVRNGSQLILGNAVPKWFGGLKNEFSYKN 863

Query: 987  INVAFLVSARLGGVVFSRTQAVLDNFGVSEASAAARDK---GYVSVNGNDR--------- 1034
             +++FL+  R     +++    L  FG ++ +A   +      V  +G+           
Sbjct: 864  FDLSFLIDFRADLKQYNQFDNFLSAFGKNDYTAIRNESIVFDGVLADGSTNTQEVWLGQG 923

Query: 1035 VNPEG-------WYSVVAGGTAVPQYYIYSATNIRLQEASIGYTIPRKWLGNV--CDIKV 1085
            V P+G       W +   G   + + ++  A+ I+L+  ++GY    + L N     I+ 
Sbjct: 924  VGPDGRDYGAGYWRNTYRG---ISENFVQDASFIKLRNITLGYDFNTELLENTPFRSIRA 980

Query: 1086 SLIGRNLWMIYNKAPFDPESVAS 1108
            S+   N+ +      FDPES ++
Sbjct: 981  SVAANNIILFTPWDGFDPESFSA 1003