Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1116 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  268 bits (685), Expect = 2e-75
 Identities = 296/1190 (24%), Positives = 503/1190 (42%), Gaps = 183/1190 (15%)

Query: 24   LLILMLFALPAQSAIAQLTIRISNSSLGTVIKQIQSQSKYQF-FYDDNLASMRIESLNVK 82
            L + ++F + A+    +LT++     L  V++ I+SQSKY+F F D+ ++  +   ++V+
Sbjct: 30   LCLSLVFQVTAKVHSQELTLKAKGLPLKEVMEMIESQSKYRFVFNDETVSQSKPVFVDVE 89

Query: 83   DVSLVEVLDKALKGKNVVYK-IDDNVVYLSKANASSSTKSTQQQQKVTGKVVDANNEPLI 141
              SL   L +    +   Y+ +D  +V   KA   ++        ++TG V+  + EPL 
Sbjct: 90   SGSLKSTLSEVFSNQPFTYELVDTYIVIKPKAGIPAAII------EITGTVLGEDGEPLP 143

Query: 142  GVSVLEKGTTNGTITDFDGNYTLVVTGSNAVLQFSYVGYQTLERAVAGKTAINITLKEDA 201
            G +V  KG++ GT+TD DG +       +AVL  S++GY   E  V  ++ I + LK   
Sbjct: 144  GATVRVKGSSRGTVTDLDGTFAFSGLEEDAVLVVSFIGYDPQEIPVNSRSKIEVILKPSQ 203

Query: 202  QVLDEVVVTALGIKRSEKALSYNVQQVNADAVTTNKDPNFINSLSGKVAGVNINASSSGV 261
              L E+VV   G ++  K ++  +     D     +       + G++ GV++ A +   
Sbjct: 204  NDLSEIVVIGYG-QQDRKEVTSAISNFRPDEKNFRQVLGPDQLMQGRMPGVHVGAGAGTP 262

Query: 262  GGVSKVVMRGTKSIMQSSNALYVVDGVPMYSNANKVNGTEFSSKGNTEPIADINPEDIES 321
            G   +V +RG  S+   +  LYVVDG+P+ ++    N   F+      P++++NP DIES
Sbjct: 263  GSNVRVSIRGIGSLSGQNEPLYVVDGIPLVNH----NAALFNLGEGMNPLSELNPNDIES 318

Query: 322  MSVLTGAAAAALYGSDAANGAIIITTKKGKEGRVNITVNSNVEFNAPLVMPRFQTRYGTG 381
            + VL  AA+AA+YGS A NG +IITTK GK G+ ++ + +N           F  +Y   
Sbjct: 319  IEVLKDAASAAIYGSRATNGVVIITTKSGKAGQSSLNIETN-----------FGIQYLPN 367

Query: 382  IGGVKDDNSSRSWGPKLTEARY-----FGYNPRDDYF---------------------QT 415
            +  +K  +S   +   L EARY      GY+P D  F                     + 
Sbjct: 368  LDKLKMADSD-LYLEVLNEARYNYNQQNGYSPGDGNFVDYMEDPYPGLPDTNWLDLVLRD 426

Query: 416  GVIGTESVSFSTGSEKNQTYASAAAVNSKGIVPNNKYDRYNFNVRNTTSFLDDKMTLDVN 475
             ++   +VSFSTG++K + Y S   +N +G++  N Y +YN  + N T    + + +  N
Sbjct: 427  ALVSNVNVSFSTGTDKTKLYISGGYLNQEGVIKTNDYKKYNAKI-NVTHQAVNWLEIGTN 485

Query: 476  ASYILQKDRNMVNQGTYNNPLVGAYLFPRGNDWEDIKMYER-YDVARKIYTQYWPTGDGN 534
             +    ++  + N GTY     G+ +F R        M +R +D   K    Y+  G   
Sbjct: 486  TNLSFSRNHRIPN-GTY-----GSSIFLR-------SMGQRPFDRPYKPNGDYYVGGTEE 532

Query: 535  MTMQNPYWVNYRNLRENKKDRY-MLGASLNYQILDWLNVSGRVRLDNS-------NNDY- 585
            +   N   +   N +  K D Y MLG      +   +  S    L NS         DY 
Sbjct: 533  LVYHNN--LQILNEQNTKLDNYRMLG-----NVYADIKFSPSFHLKNSFGMDAIYTEDYL 585

Query: 586  ---TEKAYASTNTQLTELSDRGLYGISRSYEKQLYADFL---VSVNKTFG---EKWSLQA 636
                E  Y +   +L +       G+    E  LY D     +SVN   G   +K +   
Sbjct: 586  YYTDEHPYGAGQGRLLDERRMMTNGL---IENTLYFDHTFGKLSVNALVGHSYQKVTTST 642

Query: 637  NM--GGSFTDMRYDEMAVRGPIADDSKTFAGEKAGLTNGFYIQNLSTTKTSKMQSGWREQ 694
            N   G  F    +D ++V   IA+ S  F GE A                          
Sbjct: 643  NYIDGRGFPSPSFDVLSVASEIANASSGF-GENA-------------------------- 675

Query: 695  TQSIYASAEVGYQSTYYLTLTGRNDWPSQLAGRNSVNKSFFYPSVGMSVVLS-ELMPKLN 753
             +S Y+ A + ++  Y L+L+ R D  S+ +          +PS+     LS E   K +
Sbjct: 676  LESYYSRANLSWEDKYLLSLSIRADGSSKFSPEKRYGS---FPSISAGWNLSDENFWKFS 732

Query: 754  KDYLSYWKIRGSFASVGT--AFERYIANPLFAWNTSIGQWSNL--TDFPVYDLKPERTNS 809
            +  L   K+R S+ + G       Y    L +   +    S L  + F   +L  E  N 
Sbjct: 733  QTDL---KLRASYGATGNQDGIGSYAYQALMSGGANYAGNSGLSISTFGNPNLTWETANQ 789

Query: 810  FEVGMNMRFLK---NFELDVTYYNAKTMNQTFN-PELPVGEYARIYIQTGAVRNQGLELA 865
            F+VG+++       NF  D  Y+   T N  +N P      ++ +    G++RN GLE  
Sbjct: 790  FDVGIDLGLWSGKANFSAD--YFIKNTENLLYNMPIHATSGFSSVTSNIGSMRNTGLEFL 847

Query: 866  LNYNNTWKDFTWNTGVTYSMNKNKI--------LTLADNAINPITREKFSISSLNMGGLG 917
            L+YN+ + +  W +    S  +N++        L +  N    +  E  S     M G+ 
Sbjct: 848  LDYNHRFGELQWQSSFNISFIQNELTSLLGDDPLLIGANRTLQVGEEVGSFYMYKMLGIF 907

Query: 918  ST-----RFILKEGGSMGDIYSLMDLKRDANGAVYIDENNSVVTESLEANNYIKLGSVLP 972
             T       + ++G   GD++       D NG   I+ ++  +           +G+  P
Sbjct: 908  QTDEEVPEPLYEQGVRAGDVH-----YEDVNGDGIINVDDRQI-----------IGTSNP 951

Query: 973  KGNLAWRNNFSWKNINVAFLVSARLGGVVFSRTQAVLDNF-----GVSEASAAARDKGYV 1027
                 W N F +KN +++  ++   G  +++  +   +       G  E  A  R  G  
Sbjct: 952  DFYGGWSNTFQYKNFDLSAFLTFSQGSEIYANWRITTERLGSGRQGFREEPALERWTGPG 1011

Query: 1028 SVNGNDRVNPEGWYSVVAGGTAVPQYYIYSATNIRLQEASIGYTIPRKWLG--NVCDIKV 1085
            + N   R      Y+     T     ++  A+ +RL+  S+GY++P+  L    +  +++
Sbjct: 1012 TSNEVPRAIHGTGYN-----TYNSSRFLEDASFLRLRTLSLGYSLPQSLLEKLQMSKLRI 1066

Query: 1086 SLIGRNLWMIYNKAPFDPESVASTDNFYQGIDYFMMPSLRNI--GFNLSF 1133
             + G NL++  N    DPE   + D  Y   D   +P  R I  G N SF
Sbjct: 1067 FVQGENLYLFSNYTGLDPEVSKNYDARYMSDDNMNLPQPRTIRLGLNASF 1116