Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1150 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  430 bits (1105), Expect = e-124
 Identities = 330/1163 (28%), Positives = 566/1163 (48%), Gaps = 132/1163 (11%)

Query: 49   SLGTVIKQIQSQSKYQFFYDDNLASMRI--ESLNVKDVSLVEVLDKALKGKNVVYKI--- 103
            SL  V+++++S  K    Y  +LA  +   E    +D+++ E L K LK   + Y+    
Sbjct: 44   SLPEVLRKLESIYKVSIAYPSDLADQKWSKEFTPNRDLTIDENLSKLLKDSGLNYRQGVG 103

Query: 104  -------DDNVVYLSKANASSSTKSTQQQ-QKVTGKVVDANNEPLIGVSVLEKGTTNGTI 155
                   DDN     +A +++  ++ +   +++TG VVD    P+ G SVL KGT  G++
Sbjct: 104  SFYVVVKDDNPPKPKEALSATVAQNDEALLEEITGVVVDEEGLPIPGASVLVKGTMVGSV 163

Query: 156  TDFDGNYTLVVTGSN-AVLQFSYVGYQTLERAVAGKTAINITLKEDAQVLDEVVVTALGI 214
            TD DG +++ V   + AVL  S++G+++ E  +  ++++ I +      L+EVVVTA G+
Sbjct: 164  TDLDGKFSIEVDSPDEAVLVVSFIGFESKEVTIGSESSLTIVMTSSTMALNEVVVTAFGL 223

Query: 215  KRSEKALSYNVQQVNADAVTTNKDPNFINSLSGKVAGVNINASSSGVGGVSKVVMRGTKS 274
            +R +KAL Y VQ V  + +T  ++PN +NSLSG+VAGV IN S+S  G  S+V++RG+ S
Sbjct: 224  ERDKKALGYAVQSVKGNELTEAQNPNVVNSLSGRVAGVQIN-SNSMPGSGSQVIIRGSSS 282

Query: 275  IMQSSNALYVVDGVPMYSNANKVNGTEFSSKGNTEPIADINPEDIESMSVLTGAAAAALY 334
            +  ++  L VVDGVP+   +++  G   S         +INP++I+ M+VL GA AAALY
Sbjct: 283  VAGNNQPLVVVDGVPLDQTSSRTYGNGLS---------EINPDNIKEMNVLKGATAAALY 333

Query: 335  GSDAANGAIIITTKKGKEGR-VNITVNSNVEFNAPLVMPRFQTRYGTGIG---------- 383
            GS AANG I++TTK GK  + + + +NSN+ F+ PLV P FQ  YG G G          
Sbjct: 334  GSRAANGVIMVTTKDGKGTKGIGVAINSNMTFDNPLVKPDFQNTYGGGAGYRTWYVDGRN 393

Query: 384  -----GVKDD-NSSRSWGPKL---------TEARYFGYNPR----DDYFQTGVIGTESVS 424
                 G++       SWG  +         +        P+    +D+++TG   + +++
Sbjct: 394  GFDEQGIRGTAGVDESWGAPMDGRLVPLWFSAPELVPLTPQPDNWEDFWETGKTVSNNIA 453

Query: 425  FSTGSEKNQTYASAAAVNSKGIVPNNKYDRYNFNVRNTTSFLDDKMTLDVNASYILQKDR 484
             S G++K     S   ++ K I+ NN Y R NF + NT     DK+ + ++A YI     
Sbjct: 454  VSGGNDKGNFRLSVGRLDQKSIMWNNDYYRNNFKL-NTGYNFTDKLNVTISAEYIKSGSD 512

Query: 485  NMVNQGTYNNPLVGAYL---FPRGNDWEDIKMYERYDVARKIY---TQYWPTGDGNMTMQ 538
            N    G  ++  + ++    F +  +W D      Y + R+ +     Y      +    
Sbjct: 513  NRRYSG--SSDFIWSHRHTDFTKLFNWRDY-----YGIQRETFRDGDDYPYANWQHEYFT 565

Query: 539  NPYWVNYRNLRENKKDRYMLGASLNYQILDWLNVSGRVRLDNSNNDYTEKAYASTNTQLT 598
            NPY++       N+KDR +   ++NYQ  D  ++  R   D     +T+     T  + T
Sbjct: 566  NPYFLQEYYTNANEKDRMVGNIAVNYQFTDEFSLMVRTGTD----FWTDTRMNVTGVERT 621

Query: 599  E--LSDRGLYGISRSYEKQLYADFLVSVNKTFGEKWSLQANMGGSFTDMRYDEMAVRGPI 656
            +  ++ +G Y  +    ++  +DF+ + +K F   +SL+A +GG      Y         
Sbjct: 622  KNFVTTKGSYTETVLRSQETNSDFIFTYDKEFSNTFSLKAQVGGINRTNYY--------- 672

Query: 657  ADDSKTFAGEKAGLTNGFYIQNLSTTKTSKMQSGWREQTQSIYASAEVGYQSTYYLTLTG 716
                + +        +G Y  +   +  +   +  +++  S++ SA +G+ +  +L +TG
Sbjct: 673  ---KRNYVNVTELTIDGLYNLSNYASPVTPESTIRKQEVNSLFGSATLGFNNYLFLDVTG 729

Query: 717  RNDWPSQLAGRNSVNKSFFYPSVGMSVVLSELMPKLNKDYLSYWKIRGSFASVGTAFERY 776
            RNDW S L   N+   SFFYPSV +S V++++   +  + LS+ K+R S+A VG+    Y
Sbjct: 730  RNDWSSTLPVDNN---SFFYPSVALSAVVTDIF-NVQSNVLSFAKLRASWAQVGSDASPY 785

Query: 777  IANPLF----AWNTSIGQWSNLTDFPVYDLKPERTNSFEVGMNMRFLK-NFELDVTYYNA 831
            + + ++     W  +   ++N ++    +LKPE T   E+G++MRFL+    LD TYY+ 
Sbjct: 786  MLSQVYNSEGLWAGTTPTYANASEIANVNLKPEITTGKELGLDMRFLEGRIGLDFTYYHQ 845

Query: 832  KTMNQTFNPELPVGE-YARIYIQTGAVRNQGLELALNYNNTWKD---FTWNTGVTYSMNK 887
             T NQ     +     YA   +  G + N+G+EL + Y    K     TW+    +S N+
Sbjct: 846  STTNQILAVAISSSSGYASQVLNAGEITNKGVELMV-YGTPIKSETGLTWDMSFNFSRNR 904

Query: 888  NKILTLADNAINPITREKFSISSLNMGGLGSTRFILKEGGSMGDIYSLMDLKRDANGAVY 947
            N ++ LA+        E ++++S N     S     + G   G +Y    L+      VY
Sbjct: 905  NLVVELAEGL------ENYTLASQN-----SLTSEARVGQPYGTLYGRRYLRSPEGEIVY 953

Query: 948  IDENNSVVTESLEANNYIKLGSVLPKGNLAWRNNFSWKNINVAFLVSARLGGVVFSRTQA 1007
             D         LEA  +  LG++ P     + NNFS++N ++  L+  R+GG +F     
Sbjct: 954  SDG-----LPQLEAGTF-ALGNIQPDWMGGFSNNFSFRNWSLGALIDIRMGGDLFDVGTG 1007

Query: 1008 VLDNFGVSEASAAARDKGYVSVN-------------GNDRVNPEGWYSVVAGGTAVPQYY 1054
            +    G    +A  R++G +                 ND +   G +          +  
Sbjct: 1008 LARKTGQYAETAIGREEGVIGEGVMNVGTEETPVYVQNDVIVDAGTFWNAQNPRTYHEAG 1067

Query: 1055 IYSATNIRLQEASIGYTIPRKWLGN--VCDIKVSLIGRNLWMIYNKAPFDPESVASTDNF 1112
            I+  + ++L+E ++GY+ P+ +LGN  +  +K+S +GRNL +++   P     V      
Sbjct: 1068 IFDGSYVKLRELTLGYSFPKNFLGNNFIQSMKLSAVGRNLAILFKNHPHMDPQVDMKGGN 1127

Query: 1113 YQGIDYFMMPSLRNIGFNLSFKF 1135
             QG  Y   PS R+IGFNL+  F
Sbjct: 1128 AQGFSYGEQPSTRSIGFNLNVTF 1150