Pairwise Alignments

Query, 1135 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1047 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  280 bits (715), Expect = 6e-79
 Identities = 280/1000 (28%), Positives = 424/1000 (42%), Gaps = 173/1000 (17%)

Query: 125  QQKVTGKVVDANNEPLIGVSVLEKGTTNGTITDFDGNYTLVVTGSNAVLQFSYVGYQTLE 184
            Q +VTG+V DA+   L GV+V+ KGTT GT+ DF+GNY+ +   ++A LQFS++G+ T E
Sbjct: 21   QDQVTGQVTDASGLGLPGVTVMIKGTTKGTVADFEGNYS-IEAAADATLQFSFIGFTTQE 79

Query: 185  RAVAGKTAINITLKEDAQVLDEVVVTALGIKRSEKALSYNVQQVNADAVTTNKDPNFINS 244
              V G++ IN+TL ED + LDEVVVTA+GIK+ +K L Y  Q+VN + +      N  N+
Sbjct: 80   IPVNGQSQINVTLTEDEKSLDEVVVTAIGIKQQKKKLGYATQEVNTEGLEQANTMNVGNA 139

Query: 245  LSGKVAGVNINASSSGVGGVSKVVMRGTKSIMQSSNALYVVDGVPMYSNANKVNGTEFSS 304
            LSG+VAG+ +  + +G+       +RG          L V+DGVP+ ++           
Sbjct: 140  LSGQVAGLTV-TNPTGMFQSPSFSLRG-------KTPLIVLDGVPVETD----------- 180

Query: 305  KGNTEPIADINPEDIESMSVLTGAAAAALYGSDAANGAIIITTKK-GKEGRVNITVNSNV 363
                    DI+P+DIES++VL G AA+ALYG+   NGAI+IT K   KEG       SN+
Sbjct: 181  ------FYDISPDDIESINVLKGGAASALYGARGKNGAILITRKNASKEGLTVTASTSNM 234

Query: 364  EFNAPLVMPRFQTRYGTGI-----------GGVKDDNSSRSWGPKL-------------- 398
                  V P  QT+YG G            GG+ D      WGPK               
Sbjct: 235  VTAGFTVFPETQTQYGNGSNGKYEFWDGADGGISD--GDMIWGPKFEPGVMVPQWNSPIR 292

Query: 399  --------------------TEARY-------FGYNPRDDYFQTGVIGTESVSFSTGSEK 431
                                 ++RY         ++  +D+ +TGV+     S +   E+
Sbjct: 293  DKQTGETIEWYGNVAGTIYDDKSRYERVPTPWVRHDNLNDFLRTGVVTKNDFSVAYQGER 352

Query: 432  NQTYASAAAVNSKGIVPNNKYDRYNFNVRNTTSFLDDKMTLDVNASYILQKDRNMVNQGT 491
             Q Y S    N KG VPN           ++   LD+ + LD  ASY      N    G 
Sbjct: 353  AQFYFSGNYSNQKGQVPNTSLTTGGLTFNSSFKLLDN-LQLDATASYNKVYSPNYPRYGY 411

Query: 492  YNNPLVGAYLFPRGND--WEDIK--MY----ERYDVARKIYTQYWPTGDGNMTMQNPYWV 543
                 +   L   G+D   +D+K  MY    E Y  A   Y  Y           N Y+ 
Sbjct: 412  GPKNHMYTILIWMGDDVNGQDLKDHMYVPGLEGYRQANYNYAWY----------NNVYFA 461

Query: 544  NYRNLRENKKDRYMLGASLNYQILDWLNVSGRV----RLDNSNNDYTEKAYASTNTQLTE 599
            +Y   +   ++       L YQI   L + GR+    R D S+   + K+Y +       
Sbjct: 462  SYELNQLFNQNTLDGKLKLKYQITPDLYIQGRISARQRADFSDMQ-SPKSYMNYGD---- 516

Query: 600  LSDRGLYGISRSYEKQLYADFLVSVNKTFGEKWSLQANMGGSFTDMRYDEMAVRGPIADD 659
             S  G Y +    +  L  DFL S  KT  + +S   N G S     Y +          
Sbjct: 517  -SRNGDYKMWNDNQLNLDTDFLASYYKTITDNFSFGVNAGASSFRRTYQQ---------- 565

Query: 660  SKTFAGEKAGLTNGFYIQNLSTTKTSKMQSGWREQ--TQSIYASAEVGYQSTYYLTLTGR 717
               +A     +  G Y  +LS T+     S   ++   +S+Y +  +   ++ +L LTGR
Sbjct: 566  --EYASSDGLIVPGVY--SLSNTQGPVQASNTFQEKAIRSVYGTVNLEMWNSVFLNLTGR 621

Query: 718  NDWPSQLAGRNSVNKSFFYPSVGMSVVLSEL--MPKLNKDYLSYWKIRGSFASVGTAFER 775
            NDW S L    +   S+FYPS  +S ++SE   +PK     + Y K+  S++ V +    
Sbjct: 622  NDWSSTLP---TTTNSYFYPSASLSAMVSEFITLPKA----MDYLKVYTSWSEVSSDLNP 674

Query: 776  YIANPLFAWNTSIGQWSNL---TDFPVYDLKPERTNSFEVGMNMRFL-KNFELDVTYYNA 831
            Y     +    + G   ++   +      +KPE++ +FE G++  F  K   L+ TYY  
Sbjct: 675  YSLQATYNKGVTYGSTPSVYYPSGLVNPSIKPEKSTTFEAGLSTSFAQKRLTLEGTYYRI 734

Query: 832  KTMNQTFNPELPVGE---YARIYIQTGAVRNQGLELALNYNNTWKD-FTWNTGVTYSMNK 887
               NQ    +L + E   +    +        G+E+ LNY     D F WN G+ ++   
Sbjct: 735  LDENQII--DLSISEASGFNSRKVNGNEYTTDGVEIMLNYLAIDHDKFDWNVGLNWTRFV 792

Query: 888  NKILTLADNAINPITREKFSISSLNMGGLGSTRFILKEGGSMGDIYSLMDLKRDANGAVY 947
             ++  +                       G  R+     G   D Y     ++ A+G V 
Sbjct: 793  KRLSDIYG---------------------GEDRYGNLREGDRSDSYYATVWQKSADGQVI 831

Query: 948  IDENNSVVTESLEANNYIKLGSVLPKGNLAWRNNFSWKNINVAFLVSARLGGVVFSRTQA 1007
            +D N  + T+        K+G + P   L  +N F   +  VA  V    GG++ S T  
Sbjct: 832  LDANTGLPTKDPYPT---KIGHLDPSWRLGIQNRFRIGDFRVAMDVDGAWGGLIRSLTIE 888

Query: 1008 VLDNFGVSEASAAARDKGYVSVNGNDRVNPEGWYSVVAGG 1047
             +   G    S   RD+ Y +  G     PEG   VV GG
Sbjct: 889  KMWWGGKHPNSVLYRDQEYAA--GEPVYVPEG--VVVTGG 924