Pairwise Alignments

Query, 598 a.a., putative chloride channel protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 473 a.a., H(+)/Cl(-) exchange transporter ClcA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  109 bits (272), Expect = 3e-28
 Identities = 108/462 (23%), Positives = 194/462 (41%), Gaps = 42/462 (9%)

Query: 2   KREERQSLLQRCIKWREANIKEKQFILILSFLVGIFTAIAALFLKFLIHQIQNFLTNNFN 61
           +R++ + L+QR         K    IL ++ +VG  T +  +  +  +  +QN       
Sbjct: 18  RRDQIRRLMQRD--------KTPLAILFMAAVVGTLTGLVGVAFEKAVSWVQNMRIGAL- 68

Query: 62  ATSANYLYLVYPVIGIFLA-----GWF-VRNIVKDDISHGVTKILYAISRRQGRIKRHNI 115
              A++ +L++P+  I  A     G+F VR    +    G+ +I  A+   +       +
Sbjct: 69  VQVADHAFLLWPLAFILSALLAMVGYFLVRKFAPEAGGSGIPEIEGALEELRPVRWWRVL 128

Query: 116 WSSTIASAITIGFGGSVGAEAPIVLTGSAIGSNLGSVFKMEHRTLM-LLVGCGAAGAIAG 174
               I    T+G G  +G E P V  G  +G  +  VF+M        L+  GAA  ++ 
Sbjct: 129 PVKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSA 188

Query: 175 IFKAPIAGLVFTLEVL--MIDLTMSSLLPLLISAVTAATVSYITTGTEAMFKFNLDQAFE 232
            F AP+AG++F +E +       + S+  +    + ++ V  I  G   + +        
Sbjct: 189 AFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEVGKLSDAP 248

Query: 233 LERIPYVILLGIFCGLISLYFTRAMNSIEGVF-----GKLKNPYQKLAFGGVMLSVLIFL 287
           +  +   ++LGI  G +   F   +   + +F     G++K         G +  +L  +
Sbjct: 249 VNTLWLYLILGIIFGCVGPVFNSLVLRTQDMFQRFHGGEIKKWVLMGGAIGGLCGILGLI 308

Query: 288 FPPLYGEGYDTIELLLNGTSAAEWDTVMNNSMFYGYGNLLQVYLMLIILLKVFASSATNG 347
            P   G G++ I +   G               +  G LL +++  ++   +  SS    
Sbjct: 309 EPAAAGGGFNLIPIAAAGN--------------FSVGLLLFIFITRVVTTLLCFSS---- 350

Query: 348 GGGCGGIFAPSLYLGCIAGFVFSHFSNDFAFSAYLPEKNFALMGMAGVMSGVMHAPLTGV 407
            G  GGIFAP L LG + G  F   +       +L    FA+ GM  +M+  + APLTG+
Sbjct: 351 -GAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRAPLTGI 409

Query: 408 FLIAELTGGYDLFLPLMIVSVSSYLTIIAFEPHSIYSMRLAK 449
            L+ E+T  Y L LP++I  + + L         +YS  LA+
Sbjct: 410 VLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILAR 451