Pairwise Alignments

Query, 393 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., ABC transporter permease from Serratia liquefaciens MT49

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 20/362 (5%)

Query: 12  WQVMQRECRRLVSRPLYLFCMVIAPLFCYLFFTTLMDSGLPQNLPAGVVDMDDSSTSRNI 71
           WQ   R    ++ RP++L  ++   +   ++    +      +LP GV+D D S+ SR +
Sbjct: 5   WQTFVRVLLGMLERPMWLMLILSLCVMSMVYANRTV-----WDLPVGVIDQDHSTASRQL 59

Query: 72  VRNLDAFSQTGVVAHYSNVTDARIAVQEGKIYGFFYIPKGLSAEAQSQRQPKISFYTNYS 131
           +R LDA S+  +   Y ++  A+  +   K++    +P  L  +  S +   +  Y + +
Sbjct: 60  IRQLDATSKIAIET-YDSLEQAQRDLGWRKLFAVIIMPVDLEKKILSGQNIVVPVYGDAT 118

Query: 132 YLIAGSLLFRDMKMMGELTAGSAARSVLYAKGATEDQAMGFLQPIVIDTHPLNNPWLNYS 191
             +A   + +D+    +         +L   G +E QA   L PIV  T  + NP ++++
Sbjct: 119 NRLANGQIQQDVVAAYQQLLTQYNNGLLLRSGFSERQAQVILTPIVGQTLDVFNPGISFA 178

Query: 192 VYLCNTLIPGVLMLLI---FMVTVYSIGVEIKDRTAREWLRMSNNSIYIALAGKLLPHTV 248
                 + PG+L++L+    ++    + + +K             +   A  G L     
Sbjct: 179 A----IIFPGLLVMLLQHSLLIACVRVSIAMKSMP-------GGKAPLAAHLGGLTALLP 227

Query: 249 VFFIMGIFYNVYLYGFLHFPCNSGIFPMIFATLCLVLASQCCGIVMIGTLPTLRLGLSFA 308
           ++  + I   V     L +   +GI  ++  T   +LA    G ++   L ++ +     
Sbjct: 228 IWLFLSIVLFVLWPWVLGYRQTAGIAEILLLTFPFLLAVLGLGKLVTECLRSVEMIYLTL 287

Query: 309 SLWGVISFSISGFSFPVMAMNPVLQALSNLFPLRHYFLIYVDQALNGYSMAYSWSNYMAL 368
           +      F +SG  +P+ AM   ++A+S   P              G S+   W +   L
Sbjct: 288 AFITTPIFYLSGTIWPLQAMPGWVRAISYSIPSTWATKAVAGVNQMGLSLNEVWGDVAML 347

Query: 369 LI 370
           L+
Sbjct: 348 LV 349