Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 368 a.a., ABC transporter permease from Serratia liquefaciens MT49

 Score = 60.5 bits (145), Expect = 8e-14
 Identities = 75/331 (22%), Positives = 142/331 (42%), Gaps = 28/331 (8%)

Query: 23  REFQTTFRDQGVLIFFILVPLGYPLLYSFIYDNEVVREVPAVVVDDS-HSSLSREYLRKV 81
           +E Q+  RD       IL  +   LL+ F    EV     AV  +DS H+S+  E  ++ 
Sbjct: 11  KEMQSLLRDPQTRAILILPVILQVLLFPFAATLEVTNATIAVYSEDSGHASV--ELTQRF 68

Query: 82  DATPDIQIVAYCADMEEAKQMLKNRLAYGIIYIPSDFSDNIAKGKQTQVSIYCDMSGLLY 141
                   V      +E + ++ N+ A  +I  P+ FS +IA G    + +  D  G   
Sbjct: 69  AKAKAFSHVLLLRSPQEIQSVIDNQKALLLIRFPAQFSRDIASGNTAPLQLLLD--GRNS 126

Query: 142 YKSMLIANTAVSLDMNKDIKIARSGNTTERQDEITGYPIEYEEISIFNPTAGFAAFLIPA 201
             + + AN    +   +D +    GN  +  +       E    + +NP   +  F++P+
Sbjct: 127 NSAQIAANYVQQIV--QDYQNELIGNRAKPNNS------ELVVRNWYNPNLDYKWFVVPS 178

Query: 202 VLVLIIQQTLLLGIGLAAGTARENNRFKDLV--PINRHYNGTLRIVLGKGLSYFLVYVLV 259
           ++ +I    +L+   L+    RE    + L+  P+      T +I +GK +   +V    
Sbjct: 179 LIAMITTIGVLIVTSLSVAREREQGTLEQLLVSPLT-----TWQIFIGKAVPALIVATFQ 233

Query: 260 SFYVLHIVPRLFSLNQIGQPGSLVLFVAPYLAACI----FFAMTTSIAIRNRETCMLIFV 315
           +  VL I   ++   QI   GSL+LF    L   +    F  + +S+    ++  + +FV
Sbjct: 234 ASIVLLIGIFIY---QIPFAGSLLLFYGTMLIYGLSLVGFGLLISSLCATQQQAFIGVFV 290

Query: 316 FTSVPLLFISGISWPGAAIPPFWKYVSYIFP 346
           F  +P + +SG   P   +P + + ++++ P
Sbjct: 291 F-MMPAILLSGYVSPVENMPVWLQNLTWVNP 320