Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 380 a.a., ABC transporter permease from Serratia liquefaciens MT49

 Score =  132 bits (331), Expect = 2e-35
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 17/338 (5%)

Query: 50  SFIYDNEVVREVPAVVVDDSHSSLSREYLRKVDATPDIQIVAYCADMEEAKQMLKNRLAY 109
           S +Y N  V ++P  V+D  HS+ SR+ +R++DAT  I I  Y + +E+A++ L  R  +
Sbjct: 32  SMVYANRTVWDLPVGVIDQDHSTASRQLIRQLDATSKIAIETYDS-LEQAQRDLGWRKLF 90

Query: 110 GIIYIPSDFSDNIAKGKQTQVSIYCDMSGLL----YYKSMLIANTAVSLDMNKDIKIARS 165
            +I +P D    I  G+   V +Y D +  L      + ++ A   +    N  + + RS
Sbjct: 91  AVIIMPVDLEKKILSGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLTQYNNGL-LLRS 149

Query: 166 GNTTERQDEITGYPIEYEEISIFNPTAGFAAFLIPAVLVLIIQQTLLLGIGLAAGTAREN 225
           G  +ERQ ++   PI  + + +FNP   FAA + P +LV+++Q +LL+     +   +  
Sbjct: 150 G-FSERQAQVILTPIVGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACVRVSIAMKSM 208

Query: 226 NRFKDLVPINRHYNGTLRIVLGKGLSYFLVYVLVSFYVLHIVPRLFSLNQIGQPGSLVLF 285
              K   P+  H  G   ++         +++ +S  +  + P +    Q      ++L 
Sbjct: 209 PGGK--APLAAHLGGLTALLP--------IWLFLSIVLFVLWPWVLGYRQTAGIAEILLL 258

Query: 286 VAPYLAACIFFAMTTSIAIRNRETCMLIFVFTSVPLLFISGISWPGAAIPPFWKYVSYIF 345
             P+L A +      +  +R+ E   L   F + P+ ++SG  WP  A+P + + +SY  
Sbjct: 259 TFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYSI 318

Query: 346 PSTFGINGFVKINNMGATLSEVAFEYKALWIQAGVYFL 383
           PST+       +N MG +L+EV  +   L +   VY L
Sbjct: 319 PSTWATKAVAGVNQMGLSLNEVWGDVAMLLVLGIVYTL 356