Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 384 a.a., ABC transporter permease from Serratia liquefaciens MT49

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 78/352 (22%), Positives = 147/352 (41%), Gaps = 28/352 (7%)

Query: 8   DKIAQGINDLFYIWKREFQTTFRDQGVLIFFILVPLGYPLLYSFIYDNEVVREVPAVVVD 67
           +++  G     + +  E +  FR   V     + PL    L S  +    + ++P  VVD
Sbjct: 4   ERVRAGWRCFSHAFGNECRLAFRSPVVHWLSWIFPLILFGLISSNFSEGTLLDLPVSVVD 63

Query: 68  DSHSSLSREYLRKVDATPDIQIVAYCADMEEAKQMLKNRLAYGIIYIPSDFSDNIAKGKQ 127
             HS LS+   R++DA     + AY   ++E+   L++   Y ++Y+P DF  N   GKQ
Sbjct: 64  SDHSPLSKSLTRRLDAGSHAHVEAYPGGLQESLHRLRSAQDYALLYVPPDFEANALAGKQ 123

Query: 128 TQVSIYCDMSGLLYYKSMLIAN---TAVSLDMNKDIKIARSGNTTERQDEITGYPIEYEE 184
             V +Y +    L+Y + L +    + +  ++N   +   +G   +    +    + Y  
Sbjct: 124 PSVVMYYN---ALFYGAGLYSTQDFSGLMTEINASYRSIIAGEMGKTLPPLADVTLSYG- 179

Query: 185 ISIFNPTAGFAAFLIPAVLVLIIQQTLLLGIGLAAGTARENNRFKDLVPINRHYNGTLRI 244
            S+FN +  +  +   A  + ++Q  L +   +    AR  +  K      R ++  L  
Sbjct: 180 -SLFNASGSYIYYQQFAATIHLLQ--LFVVTCMIYVLARSKSLLK-----ARPFSLAL-- 229

Query: 245 VLGKGLSYFLVYVLVSFYVLHIVPRLFSLNQIGQPGSLVLFVAPYLAAC-----IFFAMT 299
            LGK   Y L +  +    +  +  +F     G P  +++    Y+ A      + F  T
Sbjct: 230 -LGKLAPYTLCFTSLLMVEIAALVGIFDARVSGNPLFMLMIGFFYVMAAQSIGLLLFTFT 288

Query: 300 TSIAIRNRETCMLIFVFTSVPLLFISGISWPGAAIPPFWKYVSYIFPSTFGI 351
           +S          LI +  S+ L F SG++ P  ++P   + +S I P T  +
Sbjct: 289 SSTI----TAYSLIAILVSIALTF-SGMAVPELSMPLPARIISNIEPLTHAL 335