Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 775 a.a., ABC transporter permease from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  120 bits (300), Expect = 2e-31
 Identities = 95/381 (24%), Positives = 168/381 (44%), Gaps = 53/381 (13%)

Query: 25  FQTTFRD----QGVLIFFILVPLGYPLLYSFIYDNEVVREVPAVVVDDSHSSLSREYLRK 80
           F  TFR+    + V    IL  + Y   Y   Y  +    +P  +   + ++L+R  +  
Sbjct: 405 FAATFRNLPRARPVSSLLILAVVLYAFYYPAAYAGQAATGLPIAIATPTQTALTRTLVED 464

Query: 81  VDATPDIQIVAYCADMEEAKQMLKNRLAYGIIYIPSDFSDNIAKGKQTQVSIYCDMSGLL 140
           ++A+ +I++ A  +   E  ++++  +  G++ +P  F  ++ +G  T V+I+ +     
Sbjct: 465 LNASREIEVAAVISSPAEGFELMRRGVVDGVVVLPQRFEADLVRGAPTGVAIWLN----- 519

Query: 141 YYKSMLIANTAVSLDMNKDIKIARSGNTTERQDEITGYPI---------EYEEISIFNPT 191
                L+  TAV        K   +      + ++ G P            E++S+FN T
Sbjct: 520 --GGYLVRVTAVG-------KAVAAATAQVAEAQLKGLPDVARTVRLAPTLEQVSLFNQT 570

Query: 192 AGFAAFLIPAVLVLIIQQTLLLGIGLAAGTARENNRFKDLVPINRHYNGTLRIVLGKGLS 251
            G+  + +PAV ++I+QQTLLLG G+     R+        P  R         LG  L+
Sbjct: 571 EGYGGYAVPAVSLIILQQTLLLGAGVITAVRRQT-----AAPRLRR-----SARLGLWLA 620

Query: 252 YFLVYVLVSFYVLHIVPRLFSLNQIGQPGSL--VLFVAPYLAACIF-FAMTTSIAIRNRE 308
              +    S +    V   F      + G+L  VL +AP  +A +    +   +     E
Sbjct: 621 LTAIGTASSLFYFGFV---FWFQDYPRAGNLMGVLLLAPIFSAAVAAVGLLLGVLFDRHE 677

Query: 309 TCMLIFVFTSVPLLFISGISWPGAAIPPFWKYVSYIFPSTFGINGFVKINNMGATLSEV- 367
             + + V TS PL F+SG +WP   +P    +++++ PST  +  FV++N MGA+LSEV 
Sbjct: 678 RVLQVLVGTSAPLFFLSGAAWPHFMMPEGLVWLAHLSPSTAAVQAFVRLNAMGASLSEVS 737

Query: 368 ---------AFEYKALWIQAG 379
                    A  Y  LW+  G
Sbjct: 738 GLAAILTGLALVYGGLWVVRG 758



 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 25  FQTTFRDQGVLI----FFILVPLGYPLLYSFIYDNE----VVREVPAVVVDDSHSSLSRE 76
           F +  RD+  L+    +   V  G PL+   +        V+R+ P  VVD  +S+ SR 
Sbjct: 12  FVSAVRDEARLLVTRRWDAFVAFGLPLILLMVIAAMLAPGVIRQAPVAVVDQDNSAFSRA 71

Query: 77  YLRKVDATPDIQIVAYCADMEEAKQMLKNRLAYGIIYIPSDFSDNIAKGKQTQVSIYCDM 136
            +R ++A+P +++    A M EA  +++    Y + + P+DFSD  A  +  QV++    
Sbjct: 72  AIRNMEASPGVRVTHAPATMTEAMALMRRGEIYSVAHFPADFSDG-AFRRPEQVTV--SF 128

Query: 137 SGLLYYKSMLIA---NTAVSLDMNKDIKIARSGNTTERQDEITGYPIEYEEISIF-NPTA 192
           +G       L A   + A++    + ++        +R    T   +   ++SI  NP  
Sbjct: 129 NGAFQTVGALSAWGQSAAIASAAGQQLQ----ERARQRGLPETALQLPAVQVSIVGNPQL 184

Query: 193 GFAAF----LIPAVLVLIIQQTLLLGIGLAAGTARENNRFKDLVPINRHYNGTLRIVLGK 248
            F  F    L P VL L+   + +    LA G   +   FK        +  T   ++G+
Sbjct: 185 SFELFLGGLLAPGVLHLLAACSAV----LAVGRLMQGGSFKCFKAETDGF--TTTALIGR 238

Query: 249 GLSYFLVYVLVSFYVLHIVPRLFSLNQIGQPGSLVLFVAPYLAACIFFAMTTSIAIRNRE 308
            + +F+++   S + L  +  L  +   G  GSL L +   LA      M  S+ +    
Sbjct: 239 LIPHFVIF---SLWGLAWIAWLSGVRGWGVAGSLPLLILGILA-----LMAVSVVL---- 286

Query: 309 TCMLIFVFTSVPLLFISGISWPGAAI 334
           +  L+     V + F +   + GAAI
Sbjct: 287 SAFLVAALGEVDMAFSATAIYSGAAI 312