Pairwise Alignments

Query, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 370 a.a., RluA family pseudouridine synthase from Ralstonia solanacearum PSI07

 Score =  209 bits (533), Expect = 7e-59
 Identities = 132/348 (37%), Positives = 196/348 (56%), Gaps = 28/348 (8%)

Query: 8   DELENDLDDIEPVGDESQLYEHFRVVVDKGQAMVRVDKYLFERIVNASRNRIQKAAEDGF 67
           D L+++  D+ P    +Q  E   V + +     R+DK L + + + SR+R+Q+  + G 
Sbjct: 30  DTLDDEALDL-PAPGAAQAAEPIVVAIPETLHGERLDKALAKLLPDYSRSRLQQWIDAGA 88

Query: 68  VMANGKPVKSSYKVKPLDVITVMMDRPRYENEIIPENIPLNIVYEDPYVMVVNKPAGLVV 127
           V   G  V+    V   D + V+  R   E+  + E I L++VYED  ++V+NKPAGLVV
Sbjct: 89  VRVGGAAVRPRAAVCGGDRVEVVPQRAADESAFVAEPIDLDVVYEDDTLLVINKPAGLVV 148

Query: 128 HPGHGNYHGTLVNALAWHMKDIPEYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGI 187
           HP  GN+ GT++N L     +  E     P  G+VHR+DK+TSGL+V+A+T  A+T+L  
Sbjct: 149 HPAAGNWSGTVLNGLLHRYPEAAEL----PRAGIVHRLDKETSGLMVVARTLPAQTDLVR 204

Query: 188 QFFNKTTKRRYRALVWGNVEQDEGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLE 247
           Q   +T KR Y ALVWG    + GTI   I R+P+DR +MA++   S GK A TH++ L+
Sbjct: 205 QLQARTVKRTYLALVWGET-PEAGTIDAPIGRDPRDRTRMAIIETAS-GKPARTHFKTLD 262

Query: 248 RL----GYVTLVECILETGRTHQIRVHMKHIGHVLFNDERY------GGHEILKGTHFSK 297
            +      V+LV C LETGRTHQIRVH +  GH L  D  Y      G  + +K      
Sbjct: 263 VVDLGRAQVSLVRCQLETGRTHQIRVHFESEGHPLLGDPVYTRNFRRGQPQTIKAPLPVP 322

Query: 298 YKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMYFTSELPDDMTRLIE 345
           +            RQALHA+ LG VHP +G+ +++ + +PDD+  L++
Sbjct: 323 F-----------ARQALHAVRLGLVHPASGQSIHWHAGVPDDLAELMD 359