Pairwise Alignments

Query, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 323 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase from Pseudomonas sp. S08-1

 Score =  200 bits (509), Expect = 4e-56
 Identities = 127/316 (40%), Positives = 177/316 (56%), Gaps = 24/316 (7%)

Query: 37  GQAMVRVDKYLFERIVNASRNRIQKAAEDGFVMANGKPVKSSYKVKPLDVITVMMDRPRY 96
           GQ + +V   LF+     SR+R+    +DG +  +G  ++    V    V+++  ++   
Sbjct: 21  GQRLDQVAAQLFDEY---SRSRLSTWIKDGRLTVDGAVLRPRDIVHSGAVLSLEAEQEA- 76

Query: 97  ENEIIPENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDIPEYDAND 156
           + E + ++I LNIVYED +++V++KPAGLVVHP  G+  GTL+NAL  H+ DI     N 
Sbjct: 77  QGEWVAQDIALNIVYEDEHILVIDKPAGLVVHPAAGHADGTLLNALLHHVPDI----INV 132

Query: 157 PHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGS 216
           P  G+VHR+DKDT+GL+V+AKT  A+T L  Q   +T  R Y  +  G +     T+   
Sbjct: 133 PRAGIVHRLDKDTTGLMVVAKTLQAQTKLVDQLQKRTVSRIYECICIGVITSG-ATVDAP 191

Query: 217 IARNPKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGH 276
           I R+  +R +MAV+     GK AVTHYRVLER    T V   LETGRTHQIRVHM H+G+
Sbjct: 192 IGRSSANRQRMAVIDG---GKPAVTHYRVLERFRSHTHVRVKLETGRTHQIRVHMTHVGY 248

Query: 277 VLFNDERYGGH----EILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMYF 332
            L  D  Y G          T     K+F        PRQALHA  L   HP TG+ M +
Sbjct: 249 PLIGDPLYAGRFRIPPAASPTLVQTLKEF--------PRQALHARFLELEHPATGQRMKW 300

Query: 333 TSELPDDMTRLIEKWR 348
            S LP+D+  ++   R
Sbjct: 301 VSPLPEDLVWMLSLLR 316