Pairwise Alignments

Query, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 324 a.a., Pseudouridylate synthases, 23S RNA-specific from Kangiella aquimarina DSM 16071

 Score =  216 bits (551), Expect = 5e-61
 Identities = 134/308 (43%), Positives = 184/308 (59%), Gaps = 14/308 (4%)

Query: 42  RVDKYLFERIVNASRNRIQKAAEDGFVMANGKPVKSS-YKVKPLDVITVMMDRPRYENEI 100
           R+D  L ++  + SR+RIQ+  ++GFV  NG+ + S+ YK+   + I +  +      E 
Sbjct: 20  RLDAALSQQFSDYSRSRIQEWIQNGFVKVNGEVITSNKYKMAGFEDIEINAEI-EVAGEW 78

Query: 101 IPENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDIPEYDANDPHVG 160
            PE I L+IVYED  ++V+NKPAGLVVHPG GN  GT+VNAL  H  ++    AN P  G
Sbjct: 79  KPEAIDLDIVYEDDALLVINKPAGLVVHPGAGNQDGTMVNALLHHCPEL----ANLPRAG 134

Query: 161 LVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGSIARN 220
           ++HRIDK+T+GLLV+AKT  A TNL  Q  N+   R Y A+V   V    GTI   I R+
Sbjct: 135 IIHRIDKETTGLLVVAKTIAAHTNLVEQLQNRAFTREYDAVV-NRVMVSGGTIDKPIGRH 193

Query: 221 PKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFN 280
           P  R  MAV+ D   GK A+THYRV+E+    T ++  LETGRTHQIRVHM ++   L  
Sbjct: 194 PTKRTSMAVVPD---GKRAITHYRVVEKFLDHTHLKLRLETGRTHQIRVHMAYLKFPLVG 250

Query: 281 DERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMYFTSELPDDM 340
           D  Y G   +     ++    +    D+  RQALHA  LG  HP +GE + + + LP DM
Sbjct: 251 DPLYSGRYRVP----TRITPILRETLDSFKRQALHASLLGLNHPESGEYIEWRAPLPQDM 306

Query: 341 TRLIEKWR 348
           + L+E+ R
Sbjct: 307 SSLLEQLR 314