Pairwise Alignments

Query, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 364 a.a., pseudouridine synthase, RluA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  392 bits (1007), Expect = e-114
 Identities = 185/350 (52%), Positives = 252/350 (72%), Gaps = 5/350 (1%)

Query: 8   DELENDLDDIEPVGDESQL-----YEHFRVVVDKGQAMVRVDKYLFERIVNASRNRIQKA 62
           DE++++L D +   ++ Q      YEH R+ VDKGQA  RVDK+L +++ N +RN++Q+A
Sbjct: 12  DEMDDELFDFDGAAEDDQTDGASGYEHLRIAVDKGQAATRVDKFLTDKVANVTRNKVQQA 71

Query: 63  AEDGFVMANGKPVKSSYKVKPLDVITVMMDRPRYENEIIPENIPLNIVYEDPYVMVVNKP 122
            ++G V  NG   K++YK+KP DVITV+++    E E++PE + L+IV+ED +++VVNKP
Sbjct: 72  IDNGQVKINGSNTKANYKIKPGDVITVVLEMEPRETEVLPEKLDLDIVHEDDHLLVVNKP 131

Query: 123 AGLVVHPGHGNYHGTLVNALAWHMKDIPEYDANDPHVGLVHRIDKDTSGLLVIAKTPDAK 182
           AG+VVHP +GN+ GTLVN L +H   +PE   N    GLVHRIDKDTSGLLVIAK+  A 
Sbjct: 132 AGMVVHPAYGNWTGTLVNGLVYHFSQLPEMPGNSGRPGLVHRIDKDTSGLLVIAKSEQAM 191

Query: 183 TNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTH 242
           T L  QFF+ + +R Y ALVWG  ++D GTI   + R+ +DR  M V  +   GK+AVTH
Sbjct: 192 TGLAKQFFDHSIERTYIALVWGEPQEDAGTIDAHVGRSARDRKVMDVFPEGDQGKNAVTH 251

Query: 243 YRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFNDERYGGHEILKGTHFSKYKQFV 302
           ++VL+RL YV+LV+C LETGRTHQIR HMK++GH LFND  YGG +I KGT FSKYK FV
Sbjct: 252 WKVLKRLRYVSLVQCNLETGRTHQIRAHMKYLGHPLFNDAVYGGDKIRKGTQFSKYKAFV 311

Query: 303 NNCFDTCPRQALHAMTLGFVHPVTGEEMYFTSELPDDMTRLIEKWRGYIS 352
           NNCF   PRQALHA +LGF HP++ + + FTS LP+DM  ++E+W  Y++
Sbjct: 312 NNCFKLLPRQALHAKSLGFSHPISQDFLQFTSNLPEDMQSVLERWENYVN 361