Pairwise Alignments

Query, 379 a.a., putative endonuclease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 265 a.a., DNA/RNA non-specific endonuclease from Serratia liquefaciens MT49

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 26/230 (11%)

Query: 144 GGNSNLFITHTTQYNGKEVITYSFEYDCTQKSSRWVAFTFNTSTPDNNVGRAGDFSDDPS 203
           GG+SN+ I             Y+   + T K + WVA+     TP +  G+  ++  DP+
Sbjct: 36  GGSSNVSIVRHA---------YTLNNNSTTKFANWVAYHITKDTPAS--GKTRNWKADPA 84

Query: 204 IPSQYRTHDGDYTGSGYS----RGHLAASSDRQYSVAANKQTFYMSNMNPQIQNGFNGGI 259
           +         DYTG+  +    RGH A  +     V+  +   Y+SN+ PQ+ +  N G 
Sbjct: 85  LNPADTLVPADYTGANAALKVDRGHQAPLASLA-GVSDWESLNYLSNITPQMAD-LNQGS 142

Query: 260 WASLEGKVQSWGKITNDQDTLYV-AKGGTIDNNNIIKYLKANNTIPVPKYFYMAIL---S 315
           WA LE + +   K+ +  D   V    G +   N+ K         +P  ++  I    S
Sbjct: 143 WARLEDQER---KLIDRADISSVYTVTGPLYERNMGKLPGTQKAHTIPSAYWKVIFINNS 199

Query: 316 LKNGQYKAIGFWFEHKSYSNSSYAAYALSIDELEEKTGIDFFHNLPDKIE 365
            +   Y A  F F+  +  N+ +  Y ++++E+E++TG+  +  LPD ++
Sbjct: 200 PEVNHYAA--FLFDQNTPKNADFCQYRVTVNEIEKRTGLIIWAGLPDDVQ 247