Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 63.9 bits (154), Expect = 1e-15
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 10  ILPLKDKLFRLALRITLDRAEAEDVVQDTMIRVW----NKRDEWSQFESVEAYCLIVAKN 65
           +L  + K+  L +R   D  EA+DV Q+  I+ +    N R + + +  +    +  AKN
Sbjct: 26  VLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKN 85

Query: 66  LAIDRSQKK-----EAQNVEITPEMEEEPDANSPYDQLVHDEKMNIINRLVNELPEKQRL 120
             + R ++       +++ E         D  SP   L+ DE    ++R + +LPE  R 
Sbjct: 86  YLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRTIQQLPEDLRT 145

Query: 121 IMQLRDIEGESYKKIATLLNLTEEQVKVNLFRARQKV 157
            + LR+ +G SY+ IA+++      V+  +FRAR+ +
Sbjct: 146 ALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAI 182