Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 185 a.a., RNA polymerase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 8/144 (5%)

Query: 17  LFRLALRITLDRAEAEDVVQDTMIRVWNKRDEWSQFESVEAYCLIVAKNLAIDRSQKKEA 76
           +F +++RIT D AEAEDV+Q+  +  +     +    S  ++   +  N AI+  +K+ A
Sbjct: 36  MFNVSMRITNDYAEAEDVLQEAFVSAFKNLHSYKAEASFGSWLKKIVVNAAINAIRKRRA 95

Query: 77  QNVEITPEMEEEPDANSPYDQLVHDE---KMNIINRLVNELPEKQRLIMQLRDIEGESYK 133
              E+ P M+E   A  P D+   DE   ++  + R + +LP+  RL++ L  +EG  + 
Sbjct: 96  ---ELVP-MDERLVAGVP-DEKSDDEPEWQIEQVRRAIQKLPDGYRLVLSLYLLEGYDHA 150

Query: 134 KIATLLNLTEEQVKVNLFRARQKV 157
           +I  +L ++E   K    RAR+K+
Sbjct: 151 EIGEILGISESTSKSQYSRARKKL 174