Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 197 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 2   QEISFRNDILPLKDKLFRLALRITLDRAEAEDVVQDTMIRVWNKRDEWSQFESVEAYCLI 61
           ++  F  ++LP+ D L+  A R+TLD  +A D+VQ+T ++ +   D + Q  + +A+   
Sbjct: 14  KDARFEAELLPVLDPLYNFAYRLTLDEDDANDLVQETYLKAYRFFDYFEQGTNAKAWLFR 73

Query: 62  VAKNLAIDRSQKKEAQNVEI----------TPEMEEEPDANSPYD---QLVHDEKMNIIN 108
           + KN  I+  +KK  Q  ++          + ++E E    S  D   + V D   + + 
Sbjct: 74  ILKNSFINEFRKKSKQPAKVDYSEVEGYYNSEDVEGESGVASTTDMRTESVQDLIGDEVA 133

Query: 109 RLVNELPEKQRLIMQLRDIEGESYKKIATLLNLTEEQVKVNLFRARQKVKQR 160
             +N LP   R ++ L D+EG +Y+++A +L++    V+  L RAR  +K++
Sbjct: 134 SALNALPVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNSLKEK 185