Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 196 a.a., RNA polymerase, sigma-24 subunit, RpoE from Kangiella aquimarina DSM 16071

 Score = 62.4 bits (150), Expect = 4e-15
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 16  KLFRLALRITLDRAEAEDVVQDTMIRVWNK----RDEWSQFESVEAYCLIVAKNLAIDRS 71
           K+  L  R   D  E  D+ Q+  I+ +      R + + +  +    +  AKN  + + 
Sbjct: 32  KIMNLISRYVRDSHEVADISQEAFIKAYRALPGFRGDSAFYTWLYRIAINTAKNYLVSQG 91

Query: 72  QKKEAQNVE-ITPEMEEEPDA----NSPYDQLVHDEKMNIINRLVNELPEKQRLIMQLRD 126
           ++    +++ +  E  E  DA     SP   +  DE  NII + ++ELPE  +  + LR+
Sbjct: 92  RRPPGSDIDSVEAEQYEGGDALRDTGSPERIMFRDEIRNIIFKTIDELPEDLKTAITLRE 151

Query: 127 IEGESYKKIATLLNLTEEQVKVNLFRARQKVKQRYLEIDEYG 168
           ++G SY++IA +++     V+  +FRAR  + Q+   + E G
Sbjct: 152 MDGLSYEEIAEVMDCPVGTVRSRIFRARDAIDQKIAPLLEQG 193