Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 426 a.a., efflux RND transporter periplasmic adaptor subunit from Paraburkholderia sabiae LMG 24235

 Score =  146 bits (369), Expect = 9e-40
 Identities = 91/323 (28%), Positives = 171/323 (52%), Gaps = 4/323 (1%)

Query: 47  YPATIKGRQDVEIRPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATA 106
           + A  +  ++VEIR +V GF+ +   DEGA V++GQ+LF++D   +EAA+++AK ++A  
Sbjct: 74  FTAQTQSSREVEIRARVDGFLERRLYDEGALVKEGQVLFVMDRKPFEAALQSAKGALAQQ 133

Query: 107 EAAVNTQQMTVDNKIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQ 166
           +A +   +  +   I L  +  +S  DL  A  +  QA+A +  A+ ++ TA+ N S+  
Sbjct: 134 QARLLVTKQNLARVIPLAAQNALSKKDLDDATGNEKQAEAAVIAAQGEVRTAELNLSYCT 193

Query: 167 VKSPSDGVINDIPYRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTK--TGGTI 224
           ++SP  G+ +    + G+ V+P+ +  +T V ++D ++V FS +E ELL   +  T G +
Sbjct: 194 IRSPLKGLSSFARVQDGSYVTPTQSGLLTYVYQLDPMWVNFSISENELLRYREQITKGLL 253

Query: 225 KEEISKIPAIKLQLIDGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTAN 284
           +        + +   DG+ Y  +G++D       Q TG+  +RA F N    LR G    
Sbjct: 254 RFPPDNKFDVTVIQADGSIYPEKGRIDFTNPAFSQQTGTFLVRATFSNPNGTLRPGQFVR 313

Query: 285 VLIPYNME-NVISIPQSATVEIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLN 343
             +   +  N I +PQ A ++     FV+VL  D+      I + +  +G ++ V  GL 
Sbjct: 314 AKVSGAVRPNAILVPQRAVLQGAKSHFVWVLDQDSKPHQRVIDVGDW-HGDDWFVNEGLK 372

Query: 344 PGDKIVIEGVQSLKDGQKIQPIT 366
            G+++V++G   +    +I+ ++
Sbjct: 373 AGERVVVDGAIRVSSDAQIKVVS 395