Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  175 bits (443), Expect = 2e-48
 Identities = 111/365 (30%), Positives = 193/365 (52%), Gaps = 12/365 (3%)

Query: 5   IVFFAFCLALLSSCGNKGNDTGK-----VPEYAVQELQKTTANLMKAYPATIKGRQDVEI 59
           I+F      ++SSCG++ N         +  +A     K    L   YP T+    ++EI
Sbjct: 7   IIFVVGVAGVVSSCGSEANTQAGQGQQVISVHATSVTSKHVTGL-DLYPGTVVPLNEIEI 65

Query: 60  RPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDN 119
           RPQVSG+I K+ V++G  V KGQ L+ ID ++Y+AA   A+A++ +A+A +   +  +  
Sbjct: 66  RPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKANLERVKKDLAR 125

Query: 120 KIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIP 179
              L+K++ I+   L  AK  +  A++Q++ A+AQ+ +   +Y+++ + +P  G +    
Sbjct: 126 YEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVITAPFSGTVGISQ 185

Query: 180 YRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKTGGTIKEEISKIPAIKLQLI 239
            RLGA VS   +  + T+S  D V V F   E+++   +K    +K E        +Q  
Sbjct: 186 VRLGAQVSAGQSL-LNTLSSNDPVLVDFVVNERDVRRFSK---MMKNESLPDSTFTIQFG 241

Query: 240 DGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANV-LIPYNMENVISIP 298
           +   Y   G++  I   + + +G+++MR  FPN +  L  G T N+ ++  ++ + I+IP
Sbjct: 242 ENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQDIGDQIAIP 301

Query: 299 QSATVEIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKD 358
             A  E   + FVYV+  D+ V    + +     G E +V  GL PG KIV+EG+Q L++
Sbjct: 302 FKAVTEQMGEYFVYVVGDDSVVHQQNVQL-GTKVGAEIVVREGLKPGQKIVVEGIQKLRE 360

Query: 359 GQKIQ 363
           G K+Q
Sbjct: 361 GAKVQ 365



 Score = 24.6 bits (52), Expect = 0.005
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 346 DKIVIEGVQSLKDGQKIQPITPAQKEANYQQ 376
           +KI +E  Q +  GQK+  I  ++ +A Y+Q
Sbjct: 74  NKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQ 104