Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 368 a.a., efflux transporter, RND family, MFP subunit from Bacteroides ovatus ATCC 8483

 Score =  305 bits (781), Expect = 1e-87
 Identities = 154/360 (42%), Positives = 240/360 (66%), Gaps = 1/360 (0%)

Query: 4   RIVFFAFCLALLSSCGNKGNDTGKVPEYAVQELQKTTANLMKAYPATIKGRQDVEIRPQV 63
           R++    C   ++SC    +   K   YAV +++        +Y A+I+GRQD++I PQV
Sbjct: 10  RLIGIVGCTVWMASCKQASDAGVKSSSYAVMQIEAVDKEFSSSYSASIRGRQDIDIYPQV 69

Query: 64  SGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDNKIEL 123
           SG I KLCV EG  VR+GQ LFIID   Y+AA++TA A+V  A AA+ T ++T  +  EL
Sbjct: 70  SGTIEKLCVTEGQKVRRGQSLFIIDQVPYKAALKTATANVEAARAALGTAELTYKSNKEL 129

Query: 124 NKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIPYRLG 183
             ++++S++ L  A+NS   A+AQL+QA+AQ  +A+ N S+T+VKSPSDGV+  +PYR G
Sbjct: 130 YAQKVVSEFSLKTAENSYLTAKAQLSQAEAQEISARNNLSYTEVKSPSDGVVGALPYRAG 189

Query: 184 ALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKTGGTIKEEISKIPAIKLQLIDGTT 243
           ALVS +M  P+TTVS+  ++YVYFS TE +LLA+T+  G + E +  +P ++L+L D + 
Sbjct: 190 ALVSANMPYPLTTVSDNSDMYVYFSMTENQLLALTRQYGDMDEALKNMPEVELRLNDNSV 249

Query: 244 YDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPYNMENVISIPQSATV 303
           Y+ +G +++I+GVID+ TG+V  R +FPN+  +L SG +  V++P   ++ I+IPQ+ATV
Sbjct: 250 YNKKGVIESISGVIDRQTGTVVARVVFPNESRLLHSGASGTVVVPSIYKDCIAIPQTATV 309

Query: 304 EIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKDGQKIQ 363
           ++QDK  VY +     V  T I +   ++G+EY+V  GL  GD+IV EG   +++G +++
Sbjct: 310 KMQDKTIVYKVVDGKAVS-TLITVAENNDGREYVVLDGLKAGDEIVSEGAGLVREGTQVK 368