Pairwise Alignments

Query, 314 a.a., putative nifR3 family TIM-barrel enzyme with dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 321 a.a., tRNA dihydrouridine synthase DusB from Serratia liquefaciens MT49

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 62/306 (20%), Positives = 124/306 (40%), Gaps = 7/306 (2%)

Query: 10  APLQGYTEAIYRNAHDAFFGGVDTYYTPFVRLEKGNFRRRDVRGIEPENNGVPHLIPQLI 69
           AP+ G T+  +R    A   G+          E     +  +R +  +  G+  +  Q+ 
Sbjct: 15  APMAGITDRPFRTLCHAMGAGMAVSEMLSSNPEVWRTDKSRLRMVHSDEPGIRSV--QIA 72

Query: 70  ASSAEKAEVILSLFIEKGYQEVDINLGCPFPLLAKRHNGSGILPYPEEVKALLSIVTRYP 129
               +       + +  G Q +DIN+GCP   + ++  GS +L YP+ VK +L  V    
Sbjct: 73  GCDPDDMAAAARINVAGGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKQILHAVVNAV 132

Query: 130 QISFSVKMRLGW-EQPDECLALAPILNDLPLRQITMHPRLGKQGYKGEVDLQGFSAFREV 188
            +  ++K+R GW  +   C+ +A +  D  ++ +T+H R     + G  +     A ++ 
Sbjct: 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGNAEYDSIRAVKQN 192

Query: 189 CQLPLVYNGDIHNLEDIQRISTQFPSLAGIMIGRGLLANPALALE---YKENRTLAPDEM 245
             +P++ NGDI +    + +   +     +MIGR     P +  E   Y +   L P   
Sbjct: 193 VSIPIIANGDITDPHKARAV-LDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLP 251

Query: 246 RDRLKSMHKSVYNNYDVLLEGGEGQLLTKMKTFWEYLAPQTDRKVLKAIHKSTNISKYYQ 305
              +K +              G+G  + +    W       + +  +  +   + S+  +
Sbjct: 252 LGEVKRLLIGHIRELHGFYGQGKGFRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLE 311

Query: 306 AVSAFF 311
           A+ A+F
Sbjct: 312 ALEAYF 317