Pairwise Alignments

Query, 1337 a.a., cell well associated RhsD protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 3430 a.a., RHS repeat-associated core domain from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 1024 HYFVQDHLGNNRVVVDQSGNVEEVNHYYPFGGLLSSSVSNAV--QPYKYNGKELDRKNGL 1081
            +++  D+LGN   V ++ G   +   Y P+G  L            Y +N KE D +   
Sbjct: 3128 YWYHPDYLGNTEWVSNRPGYGHQYFWYSPWGEALHEDHDRGQFESRYLFNAKEQDIET-- 3185

Query: 1082 DWYDYGARMYDAALGRWHAVDPMSEKYYSWSPYTYCMGNPINHIDPDGNTV 1132
            D Y YG R YD  +  W +VD ++ KY +W+PY + M NP+N IDP+G++V
Sbjct: 3186 DNYYYGMRYYDPQISMWLSVDRLAAKYPAWTPYNFTMNNPVNLIDPNGDSV 3236



 Score = 33.5 bits (75), Expect = 4e-04
 Identities = 94/461 (20%), Positives = 159/461 (34%), Gaps = 96/461 (20%)

Query: 732  YTYEYDHAERLVKALHRLGDAQEVILIDNVYDDLGRLSRKTFHNGLLNTSYS-YNIRSWL 790
            Y   YD+A R +K L    +  + ++    YD         +  G++  +   +   S  
Sbjct: 2456 YKKRYDYAGR-IKELVEYNEDYDSVMTGFAYD---------WSTGIIQANEKDFYTESSK 2505

Query: 791  TGITGSSFEQVLHYTDGTGIPYYNGNISSMVW------KSGEDDIMRGYHFTYDNLNRLT 844
             G     ++ V     GT +      ++ M +      K+ +D I     + YDN  R T
Sbjct: 2506 EGFISRKYKDVRGNIIGTSLSSDGYALAKMYYDPLKQLKTVKDPIGEITTYEYDNFGRTT 2565

Query: 845  NAVYGEGSV----------LVQNQNRFNEQ--VTGYDKMSNILGIKRSGQTSSTGY-GLI 891
               + +  +          L++     N    V  YD     L +K       TGY G +
Sbjct: 2566 QESHPDRGISEFQYDLAGNLIEAITAENPDGIVMNYD----YLRLKEKIMPPGTGYTGDV 2621

Query: 892  DDLAMSYNG-NQLKSVSDRATNSVYGNGFDFKDGVNKEAEYEYDENGNM----------T 940
            +++  +Y      K+ + R    + GN F       K  EY+YDE GN+           
Sbjct: 2622 NNVEYTYGSPGDGKNGAGRIVEIIQGNNF-------KTEEYKYDELGNLIWEYTNIGIPN 2674

Query: 941  KDLNKKILNIQYNCLNLPSRIEFENGHVISYLYDADGIKLRTTHIIGSDTTVTDYCGNVI 1000
                +  ++ +Y+       I++ +   + Y+Y   G     + I G   TV D    V 
Sbjct: 2675 AGFREYEMSYRYDSWGRMRWIKYPDNEQVEYVYTDAGELESFSRIAGPGGTV-DIVSEVQ 2733

Query: 1001 YE--------------------NGIPVKL----LTEAGYVTLADSKYHYFVQDHLGNNRV 1036
            Y+                    NG   +L    L +A  + + D +Y Y      GN   
Sbjct: 2734 YDGFGNIAEIQYGNNTHTQFTYNGFTRRLQYSELHDADGMPMLDKEYAY---SDRGNVES 2790

Query: 1037 VVDQSGNVEE----------VNHYYPFGGLLSSSVSNAVQPYKYNGKELDRKN-GLDWYD 1085
            + + SG  +            N  Y +  L  S +SNA     + G      N G+++Y 
Sbjct: 2791 IDNSSGVYQSPLTSNELGGGYNFSYTYDAL--SRLSNASGSATFTGDASHEYNVGMEYYA 2848

Query: 1086 YGARMYDAALGRWHAVDPMSEKYYSWSPYTYCMGNPINHID 1126
             G         + H +D    KY     Y Y   N  + ID
Sbjct: 2849 DGRIRKKL---QTHTIDEAPTKYDYDMTYIYNDENKRHQID 2886



 Score = 33.1 bits (74), Expect = 5e-04
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 27/136 (19%)

Query: 729  SDSYTYEYDHAERLVKALHRLGDAQEVILIDNV-YDDLGRLSRKTFHNGLLNTSYSYNIR 787
            ++   Y Y  A  L       G    V ++  V YD  G ++   + N   +T ++YN  
Sbjct: 2700 NEQVEYVYTDAGELESFSRIAGPGGTVDIVSEVQYDGFGNIAEIQYGNNT-HTQFTYN-- 2756

Query: 788  SWLTGITGSSFEQVLHYTDGTGIPYYN--------GNISSMVWKSG-------EDDIMRG 832
                G T       LH  D  G+P  +        GN+ S+   SG        +++  G
Sbjct: 2757 ----GFTRRLQYSELH--DADGMPMLDKEYAYSDRGNVESIDNSSGVYQSPLTSNELGGG 2810

Query: 833  YHF--TYDNLNRLTNA 846
            Y+F  TYD L+RL+NA
Sbjct: 2811 YNFSYTYDALSRLSNA 2826