Pairwise Alignments

Query, 316 a.a., mobilization protein BmgA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 398 a.a., Relaxase/Mobilisation nuclease domain. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 42/301 (13%)

Query: 1   MIGKLKKGSSFGGCIRYVTGKDE---AKIIASDGVLLGTNAEITQSFELQR-----QLNP 52
           M+ ++  G +  G + Y   K E   AK + + G L   + E+    +L R     + N 
Sbjct: 1   MVARITSGKTIRGVLHYNENKVEKRQAKFLGACGYLR-QDEELDFQKKLARFQKIIETNT 59

Query: 53  RIKKPVGHIALSFKPEDKPRLTDEFMTKIAIEYMQMMGITKTQFIIIRHHNADNPHCHIV 112
           R K    HI+L+F P DK  + +  + KI  +YM+ +G  +  +++ RH +A +PH H+V
Sbjct: 60  RAKTNALHISLNFSPRDK--VDEPLLWKITEDYMRGIGFGEQPYLVYRHFDAAHPHIHVV 117

Query: 113 YNRINNESKLISDRNDYR-RNEQVTKALKSKYGLTYGTDKSNTNTRKLRNAERAKY---- 167
              I  + + I   N  R ++E+  K ++ +YGL    ++   +   L++ ++A+Y    
Sbjct: 118 TTNIREDGQRIETHNLGRVQSEKTRKDIEQRYGLVKAEEQQRKHVNLLQSLDKAEYGKTE 177

Query: 168 ---EIHNAVKDALK------MADSWEKLR--SELAKRGVHLEFVYKDKAQT-KVQGIRFC 215
               I N V + ++      +A+    LR  +  A RG     +Y+ K     +      
Sbjct: 178 TKAAISNIVGEVVRHYKFTSLAELNAILRQFNVTAYRGEEDSKMYQKKGLIYSISDANGN 237

Query: 216 KDGYSFKGTQICREYSFGKLNAKFE--------------GTENHVSTRANSAQQYEQGCR 261
           + G   K + I  + ++ KL  KFE               T N   TR++S +  +   R
Sbjct: 238 RRGVPIKASSIYSKPTYKKLEMKFELNRTARKNYRNQLRSTVNDALTRSSSLEDLQVKLR 297

Query: 262 K 262
           K
Sbjct: 298 K 298



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 61/249 (24%), Positives = 98/249 (39%), Gaps = 46/249 (18%)

Query: 79  TKIAIEYMQMMGITKTQFIIIRHHNADNPHCHIVYNRINNESKL---------ISDRNDY 129
           TK AI  +    +   +F  +   NA     ++   R   +SK+         ISD N  
Sbjct: 178 TKAAISNIVGEVVRHYKFTSLAELNAILRQFNVTAYRGEEDSKMYQKKGLIYSISDANGN 237

Query: 130 RRNEQVTKALKSKYGLTYGTDKSNTNTRKLRNAERAKY--EIHNAVKDALKMADSWEKLR 187
           RR   +    K+    +  T K      +L    R  Y  ++ + V DAL  + S E L+
Sbjct: 238 RRGVPI----KASSIYSKPTYKKLEMKFELNRTARKNYRNQLRSTVNDALTRSSSLEDLQ 293

Query: 188 SELAKRGVHLEFVYKDKAQTKVQGIRFCKDGYS--FKGTQICREYSFGKLNAKFEGTENH 245
            +L K+GVHL    +   + KV GI F    +   F G+ + +E+S   +          
Sbjct: 294 VKLRKKGVHL--TVRKNEEGKVYGITFTDHIHRCVFNGSSLGKEFSANGIQKAM------ 345

Query: 246 VSTRANSAQQYEQGCRKNEQVPFMSENCQDPWDGISSIGLFASANAQT--FESFPEDESA 303
           +    +  Q ++Q   +N+   F                     N QT  +E  P + S 
Sbjct: 346 MVKHTDEPQTHKQQTGENQSFSF-------------------PTNPQTSGYEPTPYELSQ 386

Query: 304 KKKKKKRRR 312
           KK+KKKRR+
Sbjct: 387 KKRKKKRRK 395