Pairwise Alignments

Query, 316 a.a., mobilization protein BmgA (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 398 a.a., Relaxase/Mobilisation nuclease domain. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 48/304 (15%)

Query: 1   MIGKLKKGSSFGGCIRYVTGKDEAKIIASDGVLLGTNAEITQSFELQRQ----------- 49
           M+ ++  G +  G + Y    +E+K+       LG    ++Q  EL  Q           
Sbjct: 1   MVARITTGKTIRGVLHY----NESKVEKGQAKFLGARGYLSQDKELDFQKKLMRFQEIIE 56

Query: 50  LNPRIKKPVGHIALSFKPEDKPRLTDEFMTKIAIEYMQMMGITKTQFIIIRHHNADNPHC 109
            N R K    HI+L+F P DK  + +  + KIA +YM+ +G  +  +++ RH +A +PH 
Sbjct: 57  ANTRTKTNALHISLNFSPRDK--MDETLLWKIAEDYMKGIGFGEQPYLVYRHFDAAHPHI 114

Query: 110 HIVYNRINNESKLISDRNDYR-RNEQVTKALKSKYGLTYGTDKSNTNTRKLRNAERAKY- 167
           H+V   I    + I   N  R ++E+  K ++ +YGL    ++       L+  ++A+Y 
Sbjct: 115 HLVTTNIRENGQRIETHNLGRIQSEKARKDIEQRYGLVKAEEQQRKRVNLLQPLDKAEYG 174

Query: 168 ------EIHNAVKDALK--MADSWEKLRSELAKRGVHLEFVYKDKAQTKVQGIRFC---- 215
                  I N V + ++     S  +L + L +  V      +D    + +G+ +C    
Sbjct: 175 KTETKAAISNIVGEVVRHYKFTSLAELNAILRQFNVTAYRGEEDSKMYQKKGLIYCISDA 234

Query: 216 ---KDGYSFKGTQICREYSFGKLNAKFE--------------GTENHVSTRANSAQQYEQ 258
              + G   K + I  + ++ KL  KFE               T +H  TR++S +  + 
Sbjct: 235 DGNRKGVPIKASSIYSKPTYKKLEKKFELNRTARKPYRGQLQSTVSHALTRSSSLEDLQV 294

Query: 259 GCRK 262
             RK
Sbjct: 295 ELRK 298



 Score = 41.2 bits (95), Expect = 4e-08
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 29/159 (18%)

Query: 158 KLRNAERAKY--EIHNAVKDALKMADSWEKLRSELAKRGVHLEFVYKDKAQTKVQGIRFC 215
           +L    R  Y  ++ + V  AL  + S E L+ EL K+GVHL    +   + ++ GI F 
Sbjct: 262 ELNRTARKPYRGQLQSTVSHALTRSSSLEDLQVELRKKGVHL--TVRKNEEGRIYGITFT 319

Query: 216 KDGYS--FKGTQICREYSFGKLNAKFEGTENHVSTRANSAQQYEQGCRKNEQVPFMSENC 273
              +   F G+ + +E+S   +          +    N  Q  +Q  R+           
Sbjct: 320 DHIHRCVFNGSSLGKEFSANSIQKAL------MVKSTNETQAEKQQSRE----------- 362

Query: 274 QDPWDGISSIGLFASANAQTFESFPEDESAKKKKKKRRR 312
                 I S+     +    +E  P + S KKKKKKR++
Sbjct: 363 ------IRSLSPSTGSQTSGYEPTPYELSQKKKKKKRKK 395