Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas simiae WCS417

 Score =  554 bits (1427), Expect = e-162
 Identities = 328/862 (38%), Positives = 507/862 (58%), Gaps = 21/862 (2%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+Q+  LK +HPD +M +R GDFYE +  DA  A+++L ITLT R    G++I M G P
Sbjct: 14  MMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIP 73

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120
           +H+L+ YL KL++ G+ V IC+Q+ DP  +K  V+R +  ++TPG   ++ +L+ + +N 
Sbjct: 74  YHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNL 133

Query: 121 LAAVHFGKASCGVAFLDISTGEFLTAE-GPFDYVDKLLNNFGPKEILF--ERGKRLMFEG 177
           +AAV   +   G++ LDI++G F   E   ++ +   L    P E+L   +  K L  E 
Sbjct: 134 IAAVLGDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDDWPKDLPAEK 193

Query: 178 NFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMTQ 237
             G+K        W F   +A + L + F  ++LKGFG E L   I A+G +L Y   TQ
Sbjct: 194 RRGAK----RRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLGYAKETQ 249

Query: 238 HTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISPMGARLLK 296
            T + H+ SL     D  V LD  + R+LEL  ++  G  ++L +V+DR  + MG+RLL 
Sbjct: 250 RTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQTAMGSRLLT 309

Query: 297 RWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPREV 356
           RW+  PL+D   +  R   +        F++L + QL  IGD+ERI++++ +    PR++
Sbjct: 310 RWLNRPLRDLSVLQARQTSITCLLDGYRFEKL-QPQLKEIGDIERILARIGLRNARPRDL 368

Query: 357 VQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGVI 416
            +L+ AL A+  ++ A  E D   L ++         +   + K I ++PP +I  GGV+
Sbjct: 369 ARLRDALAALPQLQAAMTELDTPHLQQLAVTAGTYPELAALLGKAIIDNPPAIIRDGGVL 428

Query: 417 KDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDKV 476
           K G + ELDEL+ +S +   +L+ ++ RE  +TG+ +LKV YN V GY+IE+ +   +  
Sbjct: 429 KTGYDSELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRVHGYFIELPSKQAESA 488

Query: 477 PQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQIN 536
           P ++ R+QTL  AER+IT ELK +E+K L A+ + L  E  LY +L++ L   +  +Q  
Sbjct: 489 PIDYQRRQTLKGAERFITPELKEFEDKALSAKSRALAREKMLYENLLEDLISQLAPLQDT 548

Query: 537 ANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVML 596
           A+ +A LD L + A  A   +   P       + I QGRHPV+E+ L     ++AND+ L
Sbjct: 549 ASALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGRHPVVEQVLT--TPFVANDLSL 606

Query: 597 DSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDN 656
           D    ++++ITGPNM GKS  +RQTALI LLA IGSFVPA S  + LVD+IFTR+G+SD+
Sbjct: 607 DD-DTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDD 665

Query: 657 ISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAK 716
           ++ G STFMVEM+E A+IL+N + RSLVL DE+GRGTST+DG+S+AWA  E +      +
Sbjct: 666 LAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAAAERL---AHLR 722

Query: 717 ARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAG 776
           A TLFATHY EL  + +S   + N +++  E + +++FL  +  G +  S+G+ VA++AG
Sbjct: 723 AYTLFATHYFELTVLPESEPLVANVHLNATEHNERIVFLHHVLPGPASQSYGLAVAQLAG 782

Query: 777 MPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQLS--FFQLDDPILCQIRDE 834
           +P  ++ RA   L +LE+       +     + S   S    S  F  L  P+L    DE
Sbjct: 783 VPNDVITRAREHLSRLETTALPHETAVASPAKASSKPSAPHQSDMFASLPHPVL----DE 838

Query: 835 ILNLDVNNLTPIEALNKLNDIK 856
           +  LD+++LTP +AL  L  +K
Sbjct: 839 LAKLDLDDLTPRKALEMLYALK 860