Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 886 a.a., DNA mismatch repair protein MutS from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  514 bits (1323), Expect = e-149
 Identities = 318/885 (35%), Positives = 487/885 (55%), Gaps = 51/885 (5%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+Q+L LKA HP+ ++ +R GDFYE +  DA  A+ +L ITLT+R    G+ + MAG P
Sbjct: 21  MMQQYLGLKAGHPNTLLFYRMGDFYELFFGDAEKAARLLDITLTQRGQSAGQPVIMAGVP 80

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120
            H++DTYL +LI+ G+ VAIC+Q+ D    K  V+R +  +VTPG   +  +L+ K    
Sbjct: 81  FHSVDTYLARLIKLGESVAICEQVGDVATAKGPVERKVVRVVTPGTLTDSELLSDKSEAV 140

Query: 121 LAAVHFG-KASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILFERGKRLMFE--- 176
           L AVH G +  CG+A++ ++ G    A+   D +   +    P E+L+       FE   
Sbjct: 141 LMAVHPGARTGCGLAWMSVTQGIVFLAQCASDELADWVARVSPGEVLYSADATPAFEKSV 200

Query: 177 -------GNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAI 229
                  G+ G +        W F  +  + KLL+  +  +L  +  + + +   A+ A+
Sbjct: 201 QALASQSGSNGGRLVAVLRPAWAFDAALGQRKLLEQLQAASLAAWDAQDMPDSHAAAAAL 260

Query: 230 LQYLTMTQHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGGS-SLLNVIDRTIS 288
           L Y   TQ   + H++SL      + + L   T R+LEL  ++    S +L +++D   +
Sbjct: 261 LNYAEHTQGRALTHVSSLQVARSGERIDLPLNTRRNLELTQTLRGETSPTLFSLLDVCCT 320

Query: 289 PMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAV 348
            MG+R L+ W++ P +D      RL  ++    +    + + + L    D+ERI ++ A+
Sbjct: 321 GMGSRALRSWLLEPRRDRAEARARLAAIDTL--RGGLWQSLRQSLKGASDVERITARTAL 378

Query: 349 GRVSPREVVQLKVALQAIEPIK-QACLEADNASLNRIGEQLN----LCISIRDRIAKEIN 403
            +V PRE+V L   L+    +  Q   +A    L+ I   L       + +RD +  E  
Sbjct: 379 RQVKPRELVGLGQTLERARQLAAQLGPQAAGGLLHGIASHLTPPDGCAVLLRDALLPE-- 436

Query: 404 NDPPLLINKGGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFG 463
             P  L+  GGVI DG + ELDELR I      +L++++QRE  +TGI +L+V +N V G
Sbjct: 437 --PAALVRDGGVIADGFDAELDELRGIQNHSDAFLIELEQRERTRTGIANLRVQFNKVHG 494

Query: 464 YYIEVRNIHKDKVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLV 523
           +YIEV      KVP ++ R+QTL NAER+IT ELK +E+K L A+D+ L  E  LY  L+
Sbjct: 495 FYIEVTQGQASKVPDDYRRRQTLKNAERFITPELKAFEDKALSAQDRALAREKWLYDHLL 554

Query: 524 QALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQL 583
             L  +IP +   A  +A LD L +    A   N+  P       +DIR GRHPV+E +L
Sbjct: 555 DELQAYIPPLTQLARAMAALDALCALTERALTLNWCAPQFVPEPCIDIRGGRHPVVEARL 614

Query: 584 --PIGEKYIANDVMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHI 641
               G  +IAND ++    Q++ +ITGPNM GKS  +RQ A+I LLA +GS VPA S  +
Sbjct: 615 NESSGGSFIANDTVM-GPKQRMQVITGPNMGGKSTYMRQVAVIVLLASMGSHVPATSCRL 673

Query: 642 GLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISI 701
           G +D I TR+GA+D+++  +STFMVEM EAA ILN  +  SLVL DE+GRGTST+DG+++
Sbjct: 674 GPIDAIHTRIGAADDLANAQSTFMVEMTEAAQILNAATPESLVLMDEIGRGTSTFDGLAL 733

Query: 702 AWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNK----VIFLRK 757
           A  I  ++H+  K++A TLFATHY EL E   S     N +VS  E   K    ++FL +
Sbjct: 734 AGGIATHLHD--KSRAYTLFATHYFELTEFPASHHAAVNVHVSAVESGGKGGGGIVFLHQ 791

Query: 758 LERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQ 817
           +E G +  S+GI VA++AG+P  +V+ A   L  LE+ +              E+RS  Q
Sbjct: 792 IEPGPASRSYGIQVARLAGVPAGVVQHARHALAALEAQS-------------EESRS--Q 836

Query: 818 LSFFQLD----DPILCQIRDEILNLDVNNLTPIEALNKLNDIKKI 858
           +  F       +P    ++  +  +D + L+P EAL +L  +KK+
Sbjct: 837 VDLFAPPPATLEPEAHPLQAAVAQIDPDTLSPREALEQLYALKKL 881