Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 855 a.a., DNA mismatch repair protein MutS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  598 bits (1543), Expect = e-175
 Identities = 341/864 (39%), Positives = 522/864 (60%), Gaps = 28/864 (3%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+Q+L LKA+HP+ ++ +R GDFYE +  DA  AS++L I+LTKR    G+ I MAG P
Sbjct: 15  MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 74

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120
           HHA++ YL KL+  G+ VAIC+Q+ DP  +K  V+R +  +VTPG   ++ +L  +++N 
Sbjct: 75  HHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNL 134

Query: 121 LAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKL--LNNFGPKEILFER--GKRLMFE 176
           LAA+       G A LDIS+G F  +E P D       L    P E+L+     +  + E
Sbjct: 135 LAAIWQDGKGYGYATLDISSGRFRLSE-PADRETMAAELQRTNPAELLYAEDFAEMALIE 193

Query: 177 GNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMT 236
           G  G +        W F   TAR++L   F T++L GFGVE+   G+ A+G +LQY+  T
Sbjct: 194 GRRGLRRRPL----WEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAAGCLLQYVKDT 249

Query: 237 QHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDG-GSSLLNVIDRTISPMGARLL 295
           Q T + HI S+    +   + +D  T R+LE+  ++  G  ++L  V+D T++PMG+R+L
Sbjct: 250 QRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDCTVTPMGSRML 309

Query: 296 KRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPRE 355
           KRW+  P+++   + +R   +       D    ++  L  +GDLERI++++A+    PR+
Sbjct: 310 KRWLHMPVRNTDILRERQQTIGAL---QDTVSELQPVLRQVGDLERILARLALRTARPRD 366

Query: 356 VVQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGV 415
           + +++ A Q +  +       D+A +  + +++     +RD + + I + PP+L+  GGV
Sbjct: 367 LARMRHAFQQLPELHAQLETVDSAPVQALRKKMGDFAELRDLLERAIIDAPPVLVRDGGV 426

Query: 416 IKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDK 475
           I  G +EELDE R ++    DYL +++ RE E+TG+ +LKV YN V GYYI++       
Sbjct: 427 IAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHL 486

Query: 476 VPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQI 535
            P  ++R+QTL NAERYI  ELK YE+K+L ++ K L LE QLY +L   L   +  +Q 
Sbjct: 487 APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQ 546

Query: 536 NANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVM 595
           +AN +A LD L++ A  A   NY  P   D   + I +GRHPV+E+ L   E +IAN + 
Sbjct: 547 SANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHPVVEQVL--NEPFIANPLN 604

Query: 596 LDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASD 655
           L S  ++++IITGPNM GKS  +RQTALI LLA IGS+VPA++  IG +D+IFTRVGA+D
Sbjct: 605 L-SPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAAD 663

Query: 656 NISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKA 715
           +++ G STFMVEM E A+IL+N +  SLVL DE+GRGTSTYDG+S+AWA  E +    K 
Sbjct: 664 DLASGRSTFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLAN--KI 721

Query: 716 KARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMA 775
           KA TLFATHY EL ++ +  + + N ++   E  + + F+  ++ G +  S+G+ VA +A
Sbjct: 722 KALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALA 781

Query: 776 GMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQLSFFQLDDPILCQIRDEI 835
           G+PK ++KRA   L++LES +          T+V     G Q+S     +     + + +
Sbjct: 782 GVPKEVIKRARQKLRELESIS-----PNAAATQV----DGTQMSLLAAPEETSPAV-EAL 831

Query: 836 LNLDVNNLTPIEALNKLNDIKKIV 859
            NLD ++LTP +AL  +  +K +V
Sbjct: 832 ENLDPDSLTPRQALEWIYRLKSLV 855