Pairwise Alignments

Query, 862 a.a., DNA mismatch repair protein mutS (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 853 a.a., methyl-directed mismatch repair protein from Escherichia coli BL21

 Score =  603 bits (1556), Expect = e-176
 Identities = 342/864 (39%), Positives = 525/864 (60%), Gaps = 28/864 (3%)

Query: 1   MMKQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFP 60
           MM+Q+L LKA+HP+ ++ +R GDFYE +  DA  AS++L I+LTKR    G+ I MAG P
Sbjct: 13  MMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 72

Query: 61  HHALDTYLPKLIRAGKRVAICDQLEDPKLTKKLVKRGITELVTPGVSINDNVLNYKENNF 120
           +HA++ YL KL+  G+ VAIC+Q+ DP  +K  V+R +  +VTPG   ++ +L  +++N 
Sbjct: 73  YHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQDNL 132

Query: 121 LAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKL--LNNFGPKEILFER--GKRLMFE 176
           LAA+       G A LDIS+G F  +E P D       L    P E+L+     +  + E
Sbjct: 133 LAAIWQDSKGFGYATLDISSGRFRLSE-PADRETMAAELQRTNPAELLYAEDFAEMSLIE 191

Query: 177 GNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASGAILQYLTMT 236
           G  G +        W F   TAR++L   F T++L GFGVE+   G+ A+G +LQY   T
Sbjct: 192 GRRGLRRRPL----WEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDT 247

Query: 237 QHTQIGHITSLARIEEDKYVRLDKFTVRSLELIGSMNDGG-SSLLNVIDRTISPMGARLL 295
           Q T + HI S+    E   + +D  T R+LE+  ++  G  ++L +V+D T++PMG+R+L
Sbjct: 248 QRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRML 307

Query: 296 KRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSPRE 355
           KRW+  P++D + + +R   +       DF   ++  L  +GDLERI++++A+    PR+
Sbjct: 308 KRWLHMPVRDTRVLLERQQTIGAL---QDFTAGLQPVLRQVGDLERILARLALRTARPRD 364

Query: 356 VVQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKGGV 415
           + +++ A Q +  ++      D+A +  + E++     +RD + + I + PP+L+  GGV
Sbjct: 365 LARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGV 424

Query: 416 IKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDK 475
           I  G NEELDE R ++    DYL +++ RE E+TG+ +LKV +N V GYYI++       
Sbjct: 425 IASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHL 484

Query: 476 VPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQIQI 535
            P  ++R+QTL NAERYI  ELK YE+K+L ++ K L LE QLY +L   L   +  +Q 
Sbjct: 485 APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQ 544

Query: 536 NANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVM 595
           +A+ +A LD L++ A  A   NY  P   D   + I +GRHPV+E+ L   E +IAN + 
Sbjct: 545 SASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVL--NEPFIANPLN 602

Query: 596 LDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASD 655
           L S  ++++IITGPNM GKS  +RQTALI L+A IGS+VPA+   IG +D+IFTRVGA+D
Sbjct: 603 L-SPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAAD 661

Query: 656 NISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKA 715
           +++ G STFMVEM E A+IL+N +  SLVL DE+GRGTSTYDG+S+AWA  E +    K 
Sbjct: 662 DLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN--KI 719

Query: 716 KARTLFATHYHELNEMEKSFKRIKNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMA 775
           KA TLFATHY EL ++ +  + + N ++   E  + + F+  ++ G +  S+G+ VA +A
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALA 779

Query: 776 GMPKSIVKRANTILKQLESDNRQQGISGKPLTEVSENRSGMQLSFFQLDDPILCQIRDEI 835
           G+PK ++KRA   L++LES +          T+V     G Q+S   + +     + + +
Sbjct: 780 GVPKEVIKRARQKLRELESIS-----PNAAATQV----DGTQMSLLSVPEETSPAV-EAL 829

Query: 836 LNLDVNNLTPIEALNKLNDIKKIV 859
            NLD ++LTP +AL  +  +K +V
Sbjct: 830 ENLDPDSLTPRQALEWIYRLKSLV 853