Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1034 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  522 bits (1344), Expect = e-152
 Identities = 357/1071 (33%), Positives = 560/1071 (52%), Gaps = 54/1071 (5%)

Query: 8    MKQKIRFKLTDRYLV---LLICFLGYISTVSA---QSHKISGVVVD-EGKSPIIGATIQV 60
            MK KI + +  +YL+    ++C  G +    A   Q   +SG V+    +  + G  + +
Sbjct: 1    MKNKI-YLMPRKYLLGIMSMLCTFGILLGQRAYGFQDRTVSGTVISGTDQLGLPGVNVLL 59

Query: 61   KGANNGTITDIDGNFSLEV-KNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDE 119
            KG+  GTITDIDGN+SL V +     L  S IGF      V     + IT+ E    LDE
Sbjct: 60   KGSQTGTITDIDGNYSLSVPEGGNIVLVFSMIGFEKQEATVGNNNHINITLSEDISALDE 119

Query: 120  VVVIGYGTVRKSDLSGSVSAVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMN 179
            VVV+GYGTV+KSDL+GSV+A+  K +     ITSA+Q + G++ GV +  NS  PG G++
Sbjct: 120  VVVVGYGTVKKSDLTGSVAALK-KEDFNPGVITSAEQLIAGKMPGVQVVQNSAEPGGGIS 178

Query: 180  IQIRGVSTLSGNTDPLYVVDGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQV 239
            + IRGV +++    PLYV+DG P   ++A    G    + +   +PL+SINP DIESI+V
Sbjct: 179  VNIRGVGSVNSGNSPLYVIDGLPFSNSSAVTGVGDRFGAPRTQRSPLSSINPADIESIEV 238

Query: 240  LKDASATAIYGSRATNGVILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFE 299
            LKDASATAIYG+R  NGVIL+TTK G++GK+++NY+A   + N++ +  LL+  +Y    
Sbjct: 239  LKDASATAIYGARGANGVILVTTKNGRKGKMSINYDAYAGVQNVANKIELLSGREYYEVI 298

Query: 300  NELDRTSNGYDMQGNVIPSTKVPRHTDDALERYKIYSTDWQDLMYQ-TAVSQDHQLAVNG 358
            N +     G +                D +E +    TDW   +YQ  A  Q H L+++G
Sbjct: 299  NAIIDEGGGSE---------------QDRVEDFNGTGTDWLGEVYQPNAGIQSHNLSMSG 343

Query: 359  GNKMTQYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSH 418
            GN+ T Y ++  Y DQ+G+I+N+G +RY  RLNL  + ++R  + LN S + +  + T  
Sbjct: 344  GNESTNYMVSLNYFDQKGLIINSGFKRYGIRLNLDHKASERFKMGLNMSSNYSRDEFTPG 403

Query: 419  S-QSSSMNQMVRRILTTKPTLMPGDQIYEDENVEYVPADNPYIMATELKDILQQRFFILN 477
              Q +    +V   +   PTL   +   +     ++  DNP  +A   + I         
Sbjct: 404  GFQLNEHAGVVFAAMHMDPTLPIRNDNGDYVISSHINIDNPVALANGKRGIGNTYRTFGT 463

Query: 478  ASLTYNFGKGLSWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTV 537
                Y    GLS K     + ++  R  Y    T  GN+A G+A + +    N ++E  +
Sbjct: 464  IYGEYKILPGLSAKLNIGGDVSNQVREFYIDRSTLDGNAAGGIASQLQGTSSNYLVEGLL 523

Query: 538  NYDRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMD-KSSSVI 596
            NY +   +    +AV+G T +       + +   F  +    Y +G G  +++  SSS +
Sbjct: 524  NYTKDIGQ-DSFSAVVGVTTQKFIVSRFSAEGRGFPSDATETYNLGLGNPSLNVVSSSKV 582

Query: 597  QTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDI 656
               L S+L R NY+L ++Y+ TA+ R DGSS     N++ +FPSFA  W++NQE+F K +
Sbjct: 583  DNTLLSYLARANYSLRNKYLLTASIRADGSSRFGQNNKFGYFPSFAFGWKVNQEEFFKPL 642

Query: 657  -PAISNIKLRLSYGVTGNQSIAYAAPLAIMNH--VRSYSGGAVTHGMVNGKLANPNLGWE 713
             P  S +K R S+G TGNQ I     ++   +  V  Y     T      ++ANP+L WE
Sbjct: 643  EPLFSTLKFRASWGRTGNQEIGNYRSISTFGNGPVVVYDDQQYTTTQ-PARIANPDLKWE 701

Query: 714  STATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFE 773
            +T   N GLD G  D+R   +++ Y + T DML++  +P SSG+ S   N+G + N G+E
Sbjct: 702  TTEQVNFGLDYGLWDDRLYGSLDWYVKNTSDMLLSLPIPRSSGFTSQLTNIGGIQNSGWE 761

Query: 774  LE-ASADILTGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYP 832
                S +I   R  W     +   +NKV D+ G   +    + G    +  I I + G P
Sbjct: 762  FGLTSRNITKQRFSWVTNIALTTVKNKVTDLGGINRI----ITGSAGATSQIAIIEEGLP 817

Query: 833  VGSFYGYVVDGVYQNEAEAKLAPFDTPQATPGSLRFKDISGPDGLPDGKITSDDMTIIGT 892
            + SFYGY V G++Q E +   A  D  Q  PG +++KD++G     DG + +DD  ++G 
Sbjct: 818  LESFYGYEVLGIWQ-EGDDYGATEDPVQ--PGDIKYKDVNG-----DGVVNADDRVVLGN 869

Query: 893  AEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSF--TDTNDNIRAEAWEGR 950
            + P   + I +    K L L +   G  G  +  LN   +D++       N  AE    R
Sbjct: 870  SFPDLIWSIGNTFKHKSLELYVFLEGVQGAKM--LNNGLIDTYFPAGVRRNRYAEPLLNR 927

Query: 951  WQGEGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFSLKKLRWLRSVR 1010
            W  E  +N +P+    + S+   KR ++  +ED S+ RL  + L+Y       +  RS++
Sbjct: 928  WTPENPTNEFPSF--VRTSAQGEKRVNSKTVEDASYLRLSTVRLSYSLPFNG-KTFRSMQ 984

Query: 1011 VFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYPSSRTYSMGINLAF 1061
             + T  N+FTIT+YSG DP ++  +G+ +  +D+ AYP +RT++ GI+L F
Sbjct: 985  FYITGQNLFTITDYSGMDPAIN-PNGSANFRIDWNAYPVARTFTGGISLTF 1034