Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1027 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  514 bits (1324), Expect = e-149
 Identities = 344/1054 (32%), Positives = 554/1054 (52%), Gaps = 60/1054 (5%)

Query: 21   LVLLICFLGYISTVSAQSHKISGVVVD-EGKSPIIGATIQVKGANNGTITDIDGNFSLEV 79
            LV+L+  +   S + AQ   ++GVV D E   P++G ++ VKG + G +TD+DG +S++ 
Sbjct: 17   LVILLNMVWSFS-LFAQGKNVTGVVKDGESGDPLVGVSVLVKGTSKGVVTDLDGAYSIQD 75

Query: 80   KNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSA 139
             + +  L  SY+G++   +P+  +  + + +   + +LDEVV++GYG   K +L+G++++
Sbjct: 76   VSTEDVLMFSYLGYSMKEIPIGSRSVIDVELVSNTSDLDEVVIVGYGVQEKRNLTGAIAS 135

Query: 140  VSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVD 199
            V  + E     +      LQGR AGV + +NSGAPG GM I IRG S+L+   +PLYVVD
Sbjct: 136  VGSE-EVRKTNVQDPISLLQGRAAGVQVTSNSGAPGGGMTINIRGNSSLNAGNNPLYVVD 194

Query: 200  GFPIEA-ATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVI 258
            G PIE   T+S+NG     S+   +NPLA+INP DIESI++LKDAS+TAIYGSRA NGV+
Sbjct: 195  GVPIETNVTSSLNG-----SENFGLNPLAAINPADIESIEILKDASSTAIYGSRAANGVV 249

Query: 259  LITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPS 318
            LITTK+GK+GK  +N N    +S I+++ ++LNA  Y      LD  +N  D +  +   
Sbjct: 250  LITTKRGKDGKAQINLNVHSGVSQITRKLDVLNASQYR--SAVLDSYANSDDGREPIFAV 307

Query: 319  TKVPRHTDDALERYKIYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNITAGYTDQEGII 378
                    D+L        DWQ  + + AV     L+V GG++  +Y  ++ + DQ+GI+
Sbjct: 308  V-------DSLSSTNNGDVDWQRELLRKAVQTSVDLSVQGGSENVRYAWSSSFLDQDGIV 360

Query: 379  MNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSSMNQMVRRILTTKPT- 437
            +N+   R + RLN+   +  RL +  + SYS     + + + + +++ ++R +L   P+ 
Sbjct: 361  LNSNYRRITSRLNVDFNVTDRLTVGQSISYSNGVNNRINAAGTGNLS-IIRELLIRPPSY 419

Query: 438  --LMPGDQIYEDENVEYVPADNPYIMATELKDILQQRFFILNASLTYNFGKGLSWKGAGS 495
               +P   +    N       NP  +A    ++ +    I    L Y   +GL ++ + +
Sbjct: 420  SMYLPDGSL----NGYQFGKRNPVGLAELSTNLNKSNRIIAGQYLEYKLAEGLKFRTSVN 475

Query: 496  FNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTVNYDRKFKKHHHINAVLGY 555
             +       T+ P   +     +  + R  +N      E  + Y ++    H++  +LG+
Sbjct: 476  VDFLSMKEDTFIPSTLDYREGYNTGSVRSTNN-LTWSNENILTYQKQVDGKHNLGGLLGF 534

Query: 556  THEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTKLSSFLGRMNYTLYDRY 615
            +++D   +   +  G F  +D +    G GT +  + +      L S+ GR++Y    RY
Sbjct: 535  SYQDWDYERTGLD-GMFFPSDDIRTLNGAGTISNQEVNIATSHSLLSYFGRVSYDYERRY 593

Query: 616  IFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKDIPAISNIKLRLSYGVTGNQS 675
            +F A  R DGSS     NR+ FFPS +V WR + E F+     + + KLR S G TGN++
Sbjct: 594  LFEANLRADGSSRFGRDNRFGFFPSASVGWRFSDEPFLNGAGVLDDGKLRFSAGQTGNEA 653

Query: 676  IA-YAAPLAIM--NHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGLDLGFIDNRFR 732
            I  Y +    M   +   YSG A T       + N  L WE+T  YNAG+DL F   R  
Sbjct: 654  IGNYTSQGEFMVGANYLDYSGAAPT------VMPNSGLSWETTTQYNAGMDLAFWQGRLG 707

Query: 733  VTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFE-LEASADILTGRVKWTLGG 791
            +T++ Y + TKD+L N  +P  +G+G I  N+GK+ NKG E L  + ++ T    W+   
Sbjct: 708  LTVDAYIKDTKDLLYNVPIPRETGFGYITQNIGKIRNKGIEVLLNTHNVATRHFTWSTSL 767

Query: 792  NIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGYVVDGVY---QNE 848
            NI  N N V ++   ELL   ++  G     + HI + GYP+G+FYG+  DGVY   ++ 
Sbjct: 768  NISKNTNIVKELP-EELLTNGFIQNG-----NFHILQEGYPIGTFYGWRFDGVYARDEDN 821

Query: 849  AEAKLAPFDTPQATPGSLRFKDISGPDGLPDGKITSDDMTIIGTAEPKFNYGINSELSWK 908
                      P    G   + D++G     D  I  +D  +IG A P F  GI ++LS+K
Sbjct: 822  INGVTNGSQGPVFEGGDPIWHDLNG-----DNVIDQNDRQVIGNATPDFFGGITNDLSYK 876

Query: 909  GLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWEGRWQGEGTSNFYP-AVNGSQ 967
              +LS +F    GG+I +   +  +S    N N+   A + RW+ +G    +P  V    
Sbjct: 877  NFSLSFMFQFSYGGEIYSEINHQRNSIVRYN-NLSTAALD-RWREQGDITDFPKPVQDDP 934

Query: 968  GSSYFNKRFSTFLLEDGSFFRLKNLTLAYQFSLKKLR--WLRSVRVFGTVTNVFTITNYS 1025
              S  + R  +  +EDGS+ +LKN+ L Y   L+ +    L  +  + T TN+ T TNY+
Sbjct: 935  LQS--DSRIQSRWVEDGSYIKLKNVNLRYSLPLELVNRIGLSRLDAYVTGTNLVTWTNYT 992

Query: 1026 GYDPEVSITSGAMSPNVDYAAYPSSRTYSMGINL 1059
            G+DP+VS  SG +   VD  +YP SRT  +G+++
Sbjct: 993  GFDPDVSSYSG-LRIGVDEGSYPQSRTVIVGLSI 1025