Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1045 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  466 bits (1200), Expect = e-135
 Identities = 337/1093 (30%), Positives = 530/1093 (48%), Gaps = 121/1093 (11%)

Query: 16   LTDRYLVLLICFLGYISTVSAQSHKISGVVVD-EGKSPIIGATIQVKGANNGTITDIDGN 74
            L+  Y V+++  +     V AQ+ +ISG V+  E + PI GAT+ VKG+  GT+TD+DGN
Sbjct: 27   LSIMYAVIILLSIHVPQAVLAQTAEISGTVISGEDQQPIPGATVLVKGSGTGTVTDLDGN 86

Query: 75   FSLEVKNPK-AQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDL 133
            F+++V  P  A L IS++G+ T  + V  +  + + +      LDEVVV+GYG  ++ DL
Sbjct: 87   FTVKVNEPATAVLSISFVGYVTQEISVNNQSTIQVELDPDVSQLDEVVVVGYGETKRKDL 146

Query: 134  SGSVSAVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNT- 192
            +GSV ++  KN  E   + +A Q LQG++AGV+I A    PG G N++IRG +T++ N  
Sbjct: 147  TGSVVSMDSKNIQEANKV-NAFQALQGQVAGVNIQAADNKPGGGFNVRIRGSNTINANET 205

Query: 193  ----------DPLYVVDGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKD 242
                      +PL+VVDG  +                    N ++ +NP DIE + VLKD
Sbjct: 206  VEQGGFNPGQNPLFVVDGIFV--------------------NDISFLNPADIERMDVLKD 245

Query: 243  ASATAIYGSRATNGVILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENEL 302
            ASATAIYGSR +NGV++I TK+G EGK+ V Y+  + +       ++L   ++  +  + 
Sbjct: 246  ASATAIYGSRGSNGVVIIETKKGSEGKMTVQYDNYIGVKEAYNLPDMLQGEEFVQYFRDA 305

Query: 303  ---------DRTSNGYDMQGNVIPSTKVPRHTDDALERYKIYSTDWQDLMYQTAVSQDHQ 353
                     D + N  D+    +     P   ++      +   +W DL+    + Q+H 
Sbjct: 306  VVGNFYASGDFSVNAGDVN---LSDYMRPNELENVANGDYV---NWIDLIQHNGMQQNHT 359

Query: 354  LAVNGGNKMTQYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQ 413
            L++NGGN  T Y I   YT  EG       ERY+ R NL S+L+    +  N   S   +
Sbjct: 360  LSLNGGNDKTVYGIGVAYTQDEGTFEGEDYERYTIRGNLSSKLSDLFSVAFNNYASFAIR 419

Query: 414  KQTSHSQSSSMNQMVRRILTTKPTLMPGDQIYEDENVEYVPAD------NPYIMATELKD 467
             + S        + +R     +PT  P D   E+ + ++ P        NP      +  
Sbjct: 420  NEGSR-------EGLRSAYRLRPTGTPFD---ENGDPQFFPLQGETFITNPLFEPDNITR 469

Query: 468  ILQQRFFILNASLTYNFGKGLSWKGAGS----FNRTDGSRSTYYPIGTNAGNSAHGMAFR 523
              +   ++ N SL++   + L      S    F+R    R  Y    + +G   +  A  
Sbjct: 470  ETRTLNYLSNLSLSFTPVENLKISSNFSPNIEFSRYGEYRGRYAK--STSGQQGNTRAEV 527

Query: 524  GEDNRQNIVLETTVNYDRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIG 583
               NR +   +  VNY+ +F   H +N    Y+    + +   +Q  ++  ++ L+Y I 
Sbjct: 528  NNRNRISYTWDNIVNYNLEFGSDHRLNTTFVYSLFMDRYENYLMQRRNYGTDEFLFYNID 587

Query: 584  EGTNTMDKSSSVIQTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAV 643
             G++         +  L S+  R+NY   D+Y+ T TGRYDGSS+LA  N+W+FFPS A 
Sbjct: 588  AGSDLRTADGGFSKQTLESYTARVNYAFKDKYLLTLTGRYDGSSILAEQNKWAFFPSAAF 647

Query: 644  AWRINQEKFMKDIPAISNIKLRLSYGVTGNQ----SIAYAAPLAIMNHVRSYSGGAVTHG 699
            AWRI  E FM+D   I+++KLRLSYG TGN      +     L+++ +  +  G  VT  
Sbjct: 648  AWRIIDEGFMQDQNFIADLKLRLSYGETGNNGTGGGLVPLGSLSLIGNNFTNIGDQVTQT 707

Query: 700  MVNGKLANPNLGWESTATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGS 759
                 LAN +L WE T  +N GLD GF +NR   ++++Y R    ++    +   SG+  
Sbjct: 708  AYVTNLANQDLTWEKTKEFNFGLDFGFFNNRLYGSLDIYHRKNTGIIFFRPISTVSGFSG 767

Query: 760  IPYNMGKMTNKGFELEA-SADILTGRVKWTLGGNIYLNRNKVDDISGN-ELLGTSYLAGG 817
            +  N+G+  NKG EL   S +I TG  KWT   N   N NK+  + G+ + +     AG 
Sbjct: 768  VFQNVGEAENKGIELGLNSVNIHTGDFKWTTSLNFAKNNNKITKLYGDLDQILFGVQAGS 827

Query: 818  GVFSQSIHITKAGYPVGSFYGYVVDGVYQNEAEAKLAPFDTPQATPGSLRFKDISGPDGL 877
                   ++ K G PVGS Y YV DG++Q +   +   +      PG +R +D++     
Sbjct: 828  -------YVHKVGEPVGSIYSYVFDGIWQLDEADEAQSYG---QQPGQVRVRDLN----- 872

Query: 878  PDGKITSDDMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTD 937
             DG I +DD T+IG+  PK++ GI +  ++K    +       G   A+   YF  S + 
Sbjct: 873  DDGSIDADDRTVIGSNMPKWSGGIANTFNYKNWDFTFFVRTNQGAVSAS---YFHISHSG 929

Query: 938  TNDNIRA---EAWEGRWQGEGTSN--FYPAVNG--SQGSSYFNKRFSTFLLEDGSFFRLK 990
              D+  A         W  +  SN  F P+ NG  S+  +Y           D SF ++ 
Sbjct: 930  GFDSTPARFNSLQTNYWTPDNPSNEWFQPSNNGPFSEPLTY----------HDVSFVKVG 979

Query: 991  NLTLAYQFSLKKLRWLR--SVRVFGTVTNVFTITNYSGYDPEVSITSGAMSPNVDYAAYP 1048
             +TL Y F    L  L+  ++R++ T  N FT TNY G+DPE +  +        + +  
Sbjct: 980  YITLGYNFKQPVLDALKIQNLRLYFTAQNPFTFTNYEGWDPENAARN-------SWGSAY 1032

Query: 1049 SSRTYSMGINLAF 1061
             SR +  GIN+ F
Sbjct: 1033 MSRIFMGGINVKF 1045