Pairwise Alignments

Query, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1057 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  560 bits (1444), Expect = e-163
 Identities = 355/1073 (33%), Positives = 565/1073 (52%), Gaps = 65/1073 (6%)

Query: 23   LLICFLGYISTVSAQSHKISGVVVD--EGKSPIIGATIQVKGANNGTITDIDGNFSLEVK 80
            + +CF      ++AQ   + G V D  EG+ P+IGATI  KG  NGT++D  G FS+ V 
Sbjct: 16   ITLCFAVLSHQLAAQP-TVRGRVTDAIEGE-PLIGATIVQKGTTNGTVSDDSGEFSISVP 73

Query: 81   NPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEVVVIGYGTVRKSDLSGSVSAV 140
               A L  SYIG+ +  V +  +  + + ++E  ++L+ VVV+GYGT +KSDL+G+V  +
Sbjct: 74   -ANATLIFSYIGYLSKEVQIGNQTTVDVALEEDLKSLEGVVVVGYGTQKKSDLTGAVGTI 132

Query: 141  SMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDG 200
            S K    I P  S DQ +QG+IAG  I   +GAPG  +NI IRGVS+++G   PLYV+DG
Sbjct: 133  SGKELLSI-PSPSFDQMMQGKIAGTQITQTTGAPGGNVNIVIRGVSSITGGNQPLYVIDG 191

Query: 201  FPIEAA-----TASVNGGTSE---LSQQPA--MNPLASINPNDIESIQVLKDASATAIYG 250
            F + A       +S NG +     ++Q  A  +NPL +INP DIESI++LKDASATAIYG
Sbjct: 192  FAMGAGGSGSDVSSFNGNSFSSGGMAQNTASKINPLTNINPADIESIEILKDASATAIYG 251

Query: 251  SRATNGVILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYD 310
            SR  NGV++ITTK+GK+G+  +N++A   +  I+ + ++LNA  +A F    D   N + 
Sbjct: 252  SRGANGVVIITTKRGKQGQSKINFDASNGVQMIANKLDMLNARQFAEFV--ADGRDNAWV 309

Query: 311  MQGNVIPSTKVPRHTDDALERYK---------IYSTDWQDLMYQTAVSQDHQLAVNGGNK 361
            + G    +   P     A  R K           +T+WQD++++ +V Q +QL+ +GG +
Sbjct: 310  LSGG---NASDPNEVRSAGTRVKPEFRNPEAITVNTNWQDVIFRPSVVQSYQLSASGGKE 366

Query: 362  MTQYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQS 421
               Y ++ GY +QEGII  +  ++++ R N+ + L KRL L ++ + S +  K       
Sbjct: 367  GVDYYVSGGYFNQEGIIKGSDFKKFNLRSNIDAYLTKRLKLGISIAGSHSWGKFARAEGH 426

Query: 422  SSMNQMVRRILTTKPTLMPGDQI--YEDENVEY--VPADNPYIMATELKDILQQRFFILN 477
                 ++   L + P L   D+   Y  E ++   VP +NP ++  E  D         N
Sbjct: 427  LGQRGLISAALASSPALSVYDKNGNYTSELLDPLGVPVENPLLIIDEFSDTRSSTNVFTN 486

Query: 478  ASLTYNFGKGLSWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNI--VLET 535
              L Y   +GL+ K +   N        +         +   +A  G   R N+  + E 
Sbjct: 487  NYLEYEIVEGLTLKSSIGINYIADHTRLWKSSEIGEWGAKTSLATAGVHQRTNLNWLNEN 546

Query: 536  TVNYDRKFKKHHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSV 595
             +NY R     H ++A++G+T +  +   L     DF  + + Y A   G N    ++ V
Sbjct: 547  VLNYRRSINGVHDVDAIVGFTAQKDKTDWLQAGATDFPTDHIEYLA---GGNVNAGTNYV 603

Query: 596  IQTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKD 655
             +  + S L R+NYT   +Y+ T T R DGSS     NRW  FPSF+V +RI++E FM+ 
Sbjct: 604  SEWSMLSLLARVNYTYKGKYLVTGTVRRDGSSRFGPNNRWGTFPSFSVGYRISEEPFMQS 663

Query: 656  IPAISNIKLRLSYGVTGNQSIAYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWEST 715
            +  I N+K+R SYGV+GN  I   A + ++   R  S      G++   LAN NL WE +
Sbjct: 664  VTFIDNLKIRASYGVSGNNLIGNYAHIGLLGTTRYVSSNQAALGIIPQSLANENLTWERS 723

Query: 716  ATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMTNKGFELE 775
               N GLD+   DNR  ++++ Y+   KD+L+N  LP  SG+ +   N+G++ NKG E  
Sbjct: 724  LQTNIGLDVALFDNRLTLSVDAYKNHKKDLLLNASLPAISGFSASTQNIGELENKGLEFT 783

Query: 776  ASADIL-TGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVG 834
              A ++ TG   W    NI +N+NKV  ++ +            + + +   T+ G P+ 
Sbjct: 784  LDAVVVNTGNFSWNSNFNIGVNKNKVLVLNSD---------NARIENSAYQFTEVGRPIS 834

Query: 835  SFYGYVVDGVYQNEAEAKLAPFDTPQATPGSLRFKDISGPDGLPDGKITSDDMTIIGTAE 894
            SFY     GV+Q+  +    P   P   PG L+F+D++G     DG IT+DD T +G   
Sbjct: 835  SFYMLHAIGVFQDWDDVDAHPKQHPDVQPGDLKFEDVNG-----DGVITNDDKTFVGDPW 889

Query: 895  PKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTNDNIRAEAWEGRWQG- 953
            P + +G N+ L +    LS+  TG  G D+       + +     + +     + RW+  
Sbjct: 890  PDYTFGFNNRLEYDNFALSISVTGSQGNDVYFQGGEIILNAAGVQNQLAVT--DERWKSL 947

Query: 954  -EGTSNFYPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQF---SLKKLRWLRSV 1009
             +  + F P    S  +   +   ++  L DGS+ R+KN+ L+Y F   +L+K+  L  +
Sbjct: 948  DDPGNGFTPRAIRSDYAKGISS--NSRYLFDGSYVRIKNINLSYTFQRQTLEKIN-LSGL 1004

Query: 1010 RVFGTVTNVFTITNYSGYDPEVSITSGAMSPN-VDYAAYPSSRTYSMGINLAF 1061
             V+G ++NV+T T+Y GYDPE S T   ++ + +DY +YP  R +++G+ ++F
Sbjct: 1005 SVYGDISNVYTFTDYPGYDPEASSTGDNIAASGIDYFSYPIPRIFTLGLRVSF 1057