Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 12  EAFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFDQLDEADR-GGWIYTAV 70
           + F   F   +  +  YA  L+ D +EA +IV  V  + W+  D +  A     ++Y  V
Sbjct: 16  QLFESTFKSHFQALYAYACMLVKDEDEAEEIVQTVFLKIWEKRDSITIASSLKAYLYQMV 75

Query: 71  RNTCLNRMKHLQVERDNAK-ALYEATLADVKSNYREHEALLQKAETIARSLPEPTCTILR 129
               +N ++H +V++ +    L++A  A  + +      L+   +   + LPE    +  
Sbjct: 76  YRNSMNYLRHQKVKQKHHDITLHQANDAGPQMDEGHDHELMDALKNALQELPEKCRKVFL 135

Query: 130 LCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMKE 169
           L  YE L Y+E+A +LGIS  TV+ H+ KAL+ LR A+ +
Sbjct: 136 LSRYESLKYQEIADRLGISVKTVETHMGKALKHLRIALAD 175