Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 189 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 77.4 bits (189), Expect = 1e-19
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 1   MFLFHKNQTKREAFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFD----Q 56
           M +    QTK  AF Q++ + Y     YA + + D E   DIVS+V    W   D     
Sbjct: 1   MKISFSRQTKERAFKQLYEDYYAPFCLYAKRFVDDKEVREDIVSDVFTSLWDKLDTDSFD 60

Query: 57  LDEADRGGWIYTAVRNTCLNRMKHLQVERDNAK------ALYEATLADVKSNYREHEALL 110
           L      G+I   V+N+CLN +KH + E   A+       LYE    +  S Y   E   
Sbjct: 61  LQSETALGYIKMCVKNSCLNFLKHQEYEWSYAENIQKKAPLYE---TETDSVYTLDELYR 117

Query: 111 QKAETIARSLPEPTCTILRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMKE 169
              ET+   LPE   T+    ++E  T+ E+A+++ +S  ++ ++  K +  LR  +K+
Sbjct: 118 MLYETL-NKLPENYRTVFMKSFFEGKTHAEIAEEMNLSVKSINRYKQKTMELLRNELKD 175