Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 12  EAFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFDQLDEADR-GGWIYTAV 70
           +AF ++F   Y  +  YA+ + G  E A +IV E+    WK  +QL        ++Y A 
Sbjct: 17  KAFEELFRCYYSPLCWYAASITGRMEVAEEIVEELFYVLWKDREQLQIFQSVKNYLYRAT 76

Query: 71  RNTCLNRMKHLQVERDNAKALYEATLADVKSN---YREHEALLQKAETIARSLPEPTCTI 127
           RN  +   +H +V+    +++  A+ ++  ++     E+E L +        LPE    I
Sbjct: 77  RNQSIQYCEHEEVKERYRESVLTASSSEQVTDPHQQMEYEELQKLINNTLEKLPERRMQI 136

Query: 128 LRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMK 168
            ++   E   Y E+A QL +S  TV+  ++K LRTLR+ ++
Sbjct: 137 FKMHRTEGKKYAEIAVQLSLSVKTVEAEMTKTLRTLRKEIE 177