Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 63.9 bits (154), Expect = 1e-15
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 14/165 (8%)

Query: 14  FGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKH----FDQLDEADRGGWIYTA 69
           F + F   +P++  YA  L+    +A D+  ++  + W       D  +E D   +++  
Sbjct: 12  FQRFFISNFPKVKNYAQLLLKSEVDAEDVAQDIFCKLWLQPEIWLDNENELDN--YLFIM 69

Query: 70  VRNTCLNRMKHLQVERDNAKALYEATLA-------DVKSNYREHEALLQKAETIARSLPE 122
            RN  LN  KH Q+ER+  +   E T+        D  +N    E LL    T+ + +PE
Sbjct: 70  TRNIILNIFKHQQIEREYQEGYLEKTVLHELIEGEDALNNIYYEEMLLVVRLTLEK-MPE 128

Query: 123 PTCTILRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAM 167
               I  L  ++ L+Y+E+A++L +S  TV+  +  AL  L++ +
Sbjct: 129 RRRLIFELSRFKGLSYKEIAEKLNVSIRTVEHQVYLALIELKKVL 173