Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 189 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 59.3 bits (142), Expect = 4e-14
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 10/167 (5%)

Query: 13  AFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFDQLDEADRGGWIYTAVRN 72
           +F  ++   Y +   +    + +   A DI SE + + W+        +    + + +RN
Sbjct: 11  SFNNIYMRYYKKSFLFVKSYIHNEMVAEDIASESLIKLWQWIQDNPVENIEPMLLSILRN 70

Query: 73  TCLNRMKHLQV---------ERDNAK-ALYEATLADVKSNYREHEALLQKAETIARSLPE 122
             L+ ++H  +         E+ N + AL  ++L D   N    + ++   +   +SLPE
Sbjct: 71  KALDYLRHESMKQQVITRISEKQNEELALRLSSLEDCNPNEIFSKEVMDIVQRTLQSLPE 130

Query: 123 PTCTILRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMKE 169
            T  I  L  + + T RE+A +L IS   V+ HISK+L+ LR+ +K+
Sbjct: 131 QTSRIFTLSRFGNKTNREIACELNISIKDVEYHISKSLKALRKTLKD 177