Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 9   TKREAFGQMFTEMYPRMVRYASQLMGDGEEARDIVSEVMEQAWKHFDQLDEADR-GGWIY 67
           T ++ F +++   Y R+VR+AS  +G   +A +IV +     W+  + L E  +   +++
Sbjct: 12  TAQKLFSKLYVSYYARLVRFASLYVGAMGDAENIVQDFFLYLWERKEILPELQQPDAYLF 71

Query: 68  TAVRNTCLNRMKHLQ------------VERDNAKALYEATLADVKSNYREHEALLQKAET 115
           +AV++ CLN ++               +E++    LY   L D  S     E   Q    
Sbjct: 72  SAVKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLD-DSQMSIDEVEKQICRA 130

Query: 116 IARSLPEPTCTILRLCYYEHLTYREVAQQLGISPDTVKKHISKALRTLREAMK 168
           I  SLPE    I  +   + + YRE+A+ LGIS +TV+  ++ ALR LRE ++
Sbjct: 131 ID-SLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREELR 182