Pairwise Alignments

Query, 541 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 490 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 95.5 bits (236), Expect = 4e-24
 Identities = 136/538 (25%), Positives = 220/538 (40%), Gaps = 76/538 (14%)

Query: 13  ALFSGALTSCNESSFLNLSDPNYFTESNFWKDKADAESALAAAYSPIKGAMYG---YFGA 69
           ALF+  LTSC    +L     +     NF K +   ES L A Y+     +     Y  A
Sbjct: 11  ALFTVVLTSCE--GYLTEEPYSQLAPENFLKTREGIESLLGATYASASNMVSNNSIYTFA 68

Query: 70  FDGWLNLNGRGDDIYTIKGEEVPMWNIA--NFLNSPSTG---NDPYGALYSGIQRANIVL 124
            D W+       DI    G+ V    +   N+   P+        +   Y  I+ AN VL
Sbjct: 69  QDEWIT------DIACQSGDGVHATALQYMNYTWDPTVDLLQGQNWDYPYRAIRNANQVL 122

Query: 125 RYIDQIPASGITEEDRSMIKGEALFLRGYQYFLLVNNYKEVPLRLIPSNEDETNKAAATE 184
             ++ + AS   + D+S+ + EA FLR   Y  L   +  VPLR   S   +     ATE
Sbjct: 123 ESLENLEAS---DADKSLYEAEARFLRATCYLKLYFKFGPVPLR--TSTAQDLQLPRATE 177

Query: 185 AALWAQVEEDLDNAIKCNLPVE-RSTAKERITKGAAIAMLGKVYATQHKYPEAKQLLGTL 243
             + + +E +L   I  NLP      A  R  K AA   L   Y    K+ +A  + G +
Sbjct: 178 EEITSFMEAELLATIP-NLPEPGDEAAYGRAHKAAAQGWLVIYYLNAKKWQQAADMAGMV 236

Query: 244 LKAPYSYELMDNFEKNFTNEEEFNKESVFELAYSPDGDYSWSNESGICLGCYIPQFIGPV 303
           +   ++Y L   +E  F  E E N+E ++        D   SN            ++   
Sbjct: 237 ID-QWNYSLFPEYEDLFKVENEQNEELIWVRPAKTSADRRASN-----------SWMNTA 284

Query: 304 KSGGWAKLMPNSLIVGEFTKETRPSDADTKFDKRMYASLFFDAANYGDKVPNEKWYGNNY 363
              G+AK     L   EF+   R    +++   + Y S  F++ +    +   ++  N+ 
Sbjct: 285 FPEGFAKDPRTGL---EFSNAWRNWPNESRIRDQFYYS--FESDDKRKDLILTEYINNDG 339

Query: 364 SMDDLWEGNEGKMAGGAPSFNVNGTAGKFLIKKNTAYYVDDKAPDNMGNKEGRSSNLRVM 423
            + +L + N+                      ++  Y+     PD  G      +++  +
Sbjct: 340 ELVNLLDDNDN--------------------TRSFKYW-----PDPEGINASFGNDIPEI 374

Query: 424 RFAEVLLLYAEACAKTNDP-DGANYALKQIRQRAGLTEKTFAQ----AELMNEIEHQCLL 478
           R+A++LL  AEA  + N P   A   + Q+R+RAGL   + +Q      L + I  +   
Sbjct: 375 RYADILLSRAEALNELNGPSQQALDLIDQVRERAGLEGLSLSQFTSKEALRDHILKERGW 434

Query: 479 EFFAEGHRFDDLKRWYSPSEIQLIFKANGKQGAENFQEKHLYYPIPTSELNNNTAMEQ 536
           EF++EG R  DL R       +LI  A  ++G  N Q  H+ YPIP + ++ N  +EQ
Sbjct: 435 EFYSEGKRRLDLIRMG-----KLISNAQ-ERGITNAQPHHVRYPIPFATMDANPLLEQ 486