Pairwise Alignments

Query, 541 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 543 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  121 bits (303), Expect = 8e-32
 Identities = 135/557 (24%), Positives = 233/557 (41%), Gaps = 68/557 (12%)

Query: 20  TSCNESSFLNLSDPNYFTESNFWKDKADAESALAAAYSPIKGAMYGYFGAFDGWLNLNGR 79
           T C +   L+L+  N FT+  +W   A AES L  AYS +  +   ++          G 
Sbjct: 20  TGCKD---LDLAPENTFTDLTYWTSAAKAESMLNTAYSQMFSSNRFFYN--------EGA 68

Query: 80  GDDIYTIKGEEVPMWNIANFLNSPSTGN--DPYGALYSGIQRANIVLRYIDQIPASGITE 137
            D+ Y  +G+     ++A     PS G     +   YS I+  NI+L  ID++    I E
Sbjct: 69  SDNAYNGRGDNAGAASLAAGTYDPSLGRLQSQWDNNYSAIKTCNILLENIDRV--EDIDE 126

Query: 138 EDRSMIKGEALFLRGYQYFLLVNNYKEVP-LRLIPSNEDETNKAAATEAALWAQVEEDLD 196
            +R  +K EA F+R YQ+F L+  + +VP L    S ED    +   ++ +   +  +L+
Sbjct: 127 GERERMKAEARFIRAYQHFQLMTWFGDVPLLDQDISIEDAQTISRTPKSQVLEFILSELE 186

Query: 197 NAIKCNLPVER---STAKERITKGAAIAMLGKVYATQHKYPEAKQLLGTLLKAPY--SYE 251
            A +  LP ++      + RIT GAA+A+  +V+  + ++ E       L+      +Y 
Sbjct: 187 AASEV-LPTQQELPEAERGRITSGAAMALKARVHLYEGQWQEVVATTEPLIMGNEYGNYG 245

Query: 252 LMDNFEKNFTNEEEFNKESVFELAYSPD----GDYSWSNESGICLGCYIPQFIGPVKSGG 307
           L   +E  F  E ++++E +  L Y P     G++   + + +  G  +   + P +   
Sbjct: 246 LFPAYEGLFMPENQYSQEDILSLQYVPQLRTWGEF--FDMAPLSAGARL-NALAPTQELV 302

Query: 308 WAKLMPNSLIVGEFTKETRPSDADTKFDKRMYASLFFDAANYGDKVPNEKWYGNNYSMDD 367
            + LM N L + +       +D     D R+ A++ +    + D       Y    +  D
Sbjct: 303 DSYLMENGLPITDSNAGYDENDPYDHRDPRLTATIVYHLYEWEDNGDTHTIYIKPGTDPD 362

Query: 368 LWEGNEGKMAGGAPSFNVNGTAGKFLIKKNTAYYVDDKAPDNMGNKEGRSSNLRVMRFAE 427
             E    +   G+ S               T YY       +         NL ++R+A+
Sbjct: 363 --ESAADEYVPGSSS-------------TTTGYYTRKYFDPSRNTDFASGLNLMLLRYAD 407

Query: 428 VLLLYAEACAKTNDPDGANY--ALKQIRQRAGLT-------EKTFAQAELMNEIEHQCLL 478
           VLL+YAEA  + N  D A +   ++ +R+RAG         +    Q  L   I ++  +
Sbjct: 408 VLLMYAEAKNELNQMDQATWDQTIRALRERAGFEAPAALDFDADLGQDGLREVIRNERRV 467

Query: 479 EFFAEGHRFDDLKRWYSPSEIQLIFKANGKQGAENFQE--------------KHLYYPIP 524
           E   EG R  D++RW    ++ L   A+G Q     ++              KH  +PIP
Sbjct: 468 ELAMEGLRVFDIRRWRIAEDV-LNGWAHGAQFGPPSEDNGYLRVNLRSFDPAKHYLWPIP 526

Query: 525 TSELNNNTAMEQTSLWK 541
             E N N  + Q   W+
Sbjct: 527 RDERNLNPNLTQNPGWE 543