Pairwise Alignments

Query, 541 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 489 a.a., SusD family. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 78/295 (26%), Positives = 127/295 (43%), Gaps = 41/295 (13%)

Query: 7   SYMCMAALFSGALTSCNESSFLNLSDPNYFTESNFWKDKADAESALAAAYSPIKGAMYGY 66
           +Y+C+ A+ + A++SCN+  +L L   N      +W +K + E+ L A Y  ++  M   
Sbjct: 4   TYICLMAVLTLAISSCND--WLELQPENNQVSDEYWTNKEEVEAVLGAGYVRLRETMEQQ 61

Query: 67  FGAFDGWLNLNGRG---------DDIYTIKGEEVPMWNIANFLNSPSTGND--PYGALYS 115
                 W  + G G          DI+ I       W+I         GND   +   Y 
Sbjct: 62  LV----WGEMRGNGLTTGSGAILADIFRIN-----QWDIL-------PGNDFVKWDKFYQ 105

Query: 116 GIQRANIVLRYIDQIPAS--GITEEDRSMIKGEALFLRGYQYFLLVNNYKEVPLRLIPSN 173
            I  AN+V++Y  ++        E        EA FLRG  YF LV N+++VPL   P  
Sbjct: 106 VINYANMVIKYGPEVVERDPSFNENVMQSYLSEAYFLRGLAYFYLVRNFRDVPLITEPYM 165

Query: 174 EDET--NKAAATEAALWAQVEEDLDNAIKCNLPVERST--AKERITKGAAIAMLGKVYAT 229
           +D+T    A +    ++ Q++ DL+ A++    V  +   AK R TK +  A L  VY  
Sbjct: 166 DDQTAFEMAKSPSNEVFQQIKMDLEGAVEYAKEVAPTVWEAKGRATKWSIYATLADVYLW 225

Query: 230 QHKYPEAKQLLGTLLKAPYSYELMDNFEKNFTN-----EEEFNKESVFELAYSPD 279
             +Y +A Q    ++ +     L++    N  N      E    E +FE+ +  D
Sbjct: 226 TEEYDKAIQACDAVINSG-QLGLLEGMVNNNNNWYRIFSEGNTNEGIFEIQFDFD 279