Pairwise Alignments

Query, 1021 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1035 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  471 bits (1211), Expect = e-136
 Identities = 327/1031 (31%), Positives = 529/1031 (51%), Gaps = 107/1031 (10%)

Query: 27   IKGMVTEATTNEPLPGVTVRVKGKDTGTVTDMDGKYSIKANKGN---ILIFSTIGMKQIE 83
            +KG VT+      LPG TV++KG DTGT+TD  G Y+I+ + G+   +L+FS +G +  E
Sbjct: 70   VKGKVTDQE-GASLPGATVQIKGTDTGTITDEQGNYTIRLSGGSSEQVLVFSFVGFQGKE 128

Query: 84   KAVTSGTPINVSMEEDNIALEQVVVIGYGTVKKSHLSGAVGSVSAKELNGQVASNAATAL 143
             AV + + ++V++  +   LE+VVVIGYG+ +K+ L+GA+  VS +E+N    ++   AL
Sbjct: 129  VAVGNQSQVDVTLGSEEKELEEVVVIGYGSARKADLTGAISQVSTEEVNAFPTTSVVQAL 188

Query: 144  QGKIPGVSVASSSGDPNGSMTINVRGISSL-SNNNPLYVVDG--AFGDISMVDPNDISSI 200
             G+ PGV V  + G P G + I +RG +S+  +N+PLYV+DG    G+ + ++ +DI+SI
Sbjct: 189  AGRAPGVQVVQNDGSPGGGVDIRIRGSNSIQGDNSPLYVIDGFPYSGNPTNLNNSDIASI 248

Query: 201  EVLKDAAAAAIYGSRAAGGVVLITTKSGRKDMPTKLDVNFFTGVSQTPKTLKVFNGEEYS 260
            EVLKDA+A AIYGSR A GVVLITTK G    PT+++ + +  V    K L + NG +Y 
Sbjct: 249  EVLKDASATAIYGSRGANGVVLITTKGG-VQAPTQVEFDSYYSVQHLRKKLDLMNGRQYG 307

Query: 261  RFARYYKLAGDGYGAENGATPFIGE--------GTDWQDVMLRTAMTYKANATISGGSKN 312
            +             A +G  P+  E        GTDWQD +   A    ++  +SGG+++
Sbjct: 308  QLMNI-------QAANDGLDPYFSESELSAMDTGTDWQDQVFDRAPIKSSSIRVSGGNES 360

Query: 313  GSYSSSVSYLNKEGILRNTDHESYNIRLKSDYSFFDNRLTIGESMIVNLTK-------GS 365
              +S   S  ++EGI+R +D+  Y ++    +S  D +LTI  S   NLTK         
Sbjct: 361  TRFSVGGSIFDQEGIIRGSDYNRYALQSSIHHSLSD-KLTIDFS--TNLTKLTTARRDSD 417

Query: 366  GYIHQDTMFDIFQFPSVVPVYDPTNAGGWGTSNDINLP-------NPLAEMTVNDERTET 418
            G    ++M       S  P+  P    G  T    + P       NPL  +         
Sbjct: 418  GGARGNSMIGAALVAS--PLSSPYAPDGSLTVLSEDFPFVSPDIINPLNYINEEFNTVNA 475

Query: 419  TKIFLNAYLQAEIIKGLKYKLNVGIRKEHTKWRYYKDVYDLGTFGKNDKPDLEEKSSTWE 478
              +  NA +    I  L  K+  GI     +     DVY    F  +D  +    +  + 
Sbjct: 476  NIVLANASVSYRPIPKLTIKILGGIENRDDR----TDVYRTTDFINSD-GNASVNTRQYI 530

Query: 479  SWVLENTLNYDRTFG-KHNLSLLAGYSAQKDKSYSLYGKNGDMPQFIETMPG--NVDPSN 535
            S + ENT++Y  T   KH   +LAG++ Q  ++  L G +     F+  + G  N+  +N
Sbjct: 531  SRLNENTISYADTLDEKHKFDVLAGFTYQDFQTRYLAGSSAG---FLSDLFGTDNLGAAN 587

Query: 536  LKA--SSSLNELALVSLFGRVMYSFDDRYLFSASIRRDGSSRFRSGHQYGAFPSASIGWN 593
                 +S   +  L+S  GR+ Y++ D+YLF+A+ R DGSSR+  G+++G FPSA++ W 
Sbjct: 588  TPGVPTSGYAKSVLLSYIGRLNYNYADKYLFTATWRADGSSRYSEGNKWGHFPSAALAWR 647

Query: 594  INREKFFKPLENVFDQLKLRFSYGKLGNQEMTSYYPTQSVVSDGMNYVMNNSPWFGSMPY 653
            +++E F +  + V  +LK+R S+G  G+Q +  Y          +N +      FG   Y
Sbjct: 648  VSQEGFMQQ-QQVVSELKIRTSWGLTGSQAIDPY--------STLNRLFPGYTVFGEELY 698

Query: 654  ----VQAISPANLTWENTETYNIGLDVSLLNGRLTLTADAYVKNTNDVLLPIPSTASTGI 709
                 Q++ P +L WE TE +++GLD+ L+ GR+ L AD Y+KNT D+L  +   +S G 
Sbjct: 699  STFAPQSVLPGDLKWETTEQFDVGLDLGLIGGRIMLGADYYIKNTRDLLSTVRLPSSFGY 758

Query: 710  SGNSIQNAGQVRNKGFELAVNYRGAIKEKFNYYIGANIAADKNEVTKITLGGQNLMISGY 769
            +  ++ N G+++NKG EL+++    +   F++ +  NIA ++N V  I+L     +++ Y
Sbjct: 759  T-TTVANVGEIQNKGLELSMD-AIVLNRGFHWNLSGNIAFNRNRV--ISLNDGEPILTNY 814

Query: 770  SAHGAGGRGINMFAEGHPMSYFNLIETDGLFRSAEEIANYKNKDGELIQPAAQVGDVRYK 829
                      ++  EG P+  F   + DG                       + G++RY+
Sbjct: 815  INVVTVADNFSIMEEGRPLGQFWGYQEDGY---------------------TEDGNIRYR 853

Query: 830  DWNGDGKINTDDQHDVGSPFPDFTFGIRLGGEWNNFDFNLFFDGMVGNKIYNYPRY--RL 887
            D NGDG+IN  D+  +G P PDF +GI     + NF  +LF  G  GN I+N       +
Sbjct: 854  DLNGDGEINESDKTAIGDPNPDFYYGINSTMTFKNFQLDLFLQGTKGNDIFNVSAISSTM 913

Query: 888  ESGNFNGNMSTVLANSWRPDNQNTDIPRFSKTDGADNKWAYTDRWLEDGSYIRLKTLDIG 947
            + G        VL + W  +N +   PR S+    +N    +DR++EDGSY+R+K + + 
Sbjct: 914  DFGQGLNMPEEVLLDHWTAENTDAKYPRISR----NNDLKVSDRYVEDGSYLRVKNIQLA 969

Query: 948  YTLPKVLTKKIKLENVRIYTSMENLFTLTKYSGYTPDLGESSVAGVAYNVFSRGIDQGRY 1007
            Y      +K I   N+++Y S +NL T T YS + P++  +          S GID   Y
Sbjct: 970  YDFAFPESKWI--GNLKLYVSGQNLLTFTDYSWWDPEVNSNGADA------SLGIDHFSY 1021

Query: 1008 PLPRTISFGIQ 1018
            P+P++ + G++
Sbjct: 1022 PIPKSYTVGLR 1032