Pairwise Alignments

Query, 1021 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1052 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  483 bits (1243), Expect = e-140
 Identities = 330/1075 (30%), Positives = 541/1075 (50%), Gaps = 91/1075 (8%)

Query: 8    LLFFFLCLTSIPLAAQDIEIKGMVTEATTNEPLPGVTVRVKGKDTGTVTDMDGKYSIKAN 67
            LL F L +  I  A   + + G V+ A+  E +PGV++ +KG   G  TD++G Y+I A+
Sbjct: 6    LLGFLLLIAGITYA--QVTVTGTVSAASDGEAIPGVSIIIKGTTKGVTTDLEGNYTITAD 63

Query: 68   KGNILIFSTIGMKQIEKAVTSGTPINVSMEEDNIALEQVVVIGYGTVKKSHLSGAVGSVS 127
              N+L++S IG K  E ++ + + IN+ +EED   LE+ VV+GYGT+KKS +S A  +V+
Sbjct: 64   ADNVLVYSFIGYKPQEMSIGNQSVINIQLEEDISNLEEFVVVGYGTMKKSDMSSAHVTVT 123

Query: 128  AKELNGQVASNAATALQGKIPGVSVASSSGDPNGSMTINVRGISSL-SNNNPLYVVDG-- 184
            ++++   V +    A+QG+  GV V  ++G P G +++N+RGI+S+   N PLYV+DG  
Sbjct: 124  SEDIEKTVNTTIEQAIQGRAAGVYVTKNTGAPGGGLSVNIRGINSIGGTNEPLYVIDGVQ 183

Query: 185  ------AFG------DISMVDPNDISSIEVLKDAAAAAIYGSRAAGGVVLITTKSGRKDM 232
                  ++G       ++ ++P+DI S+E+L+  +A AIYGSR   GVVLITTK G K+ 
Sbjct: 184  IQPNTVSYGPTSGTNPLAGLNPSDIESMEILQGPSATAIYGSRGTNGVVLITTKRG-KEG 242

Query: 233  PTKLDVNFFTGVSQTPKTLKVFNGEEYSRFARYYK-LAGDGYGAENGATPFIGEGTDWQD 291
             T ++ ++   +   P  L V N ++Y+      + L G    A       +GEGTDWQD
Sbjct: 243  QTNINYSYLYSLQDKPDNLAVMNLQQYAEMTNTIRDLTGGDPPAAFLDPSLLGEGTDWQD 302

Query: 292  VMLRTAMTYKANATISGGSKNGSYSSSVSYLNKEGILRNTDHESYNIRLKSDYSFFDNRL 351
             + +TA   K   ++SGG+++  Y  S  Y N++G+   +  E Y++RL  D    D  L
Sbjct: 303  ALYKTAALNKHTLSLSGGNESTKYYLSGEYFNQDGVAIGSGFERYSMRLNLDNEVRD-WL 361

Query: 352  TIGESMIVN-----LTKGSGYIHQDTMFDIFQFPSVVPVYDPTNAGGWGTSNDIN----- 401
             IG ++ +N     L  GS     D +    Q    +PV +P   G WG ++ +N     
Sbjct: 362  NIGVNLALNETDEQLATGS----SDVINYAIQMAPNIPVQNPD--GSWGGADPLNGSSLQ 415

Query: 402  --LPNPLAEMTVNDERTETTKIFLNAYLQAEIIKGLKYKLNVGIRKEHTKWRYYKDVYDL 459
               PNP+A   + D   +  +      +  +I++GL++   +     +    ++   Y L
Sbjct: 416  FTPPNPIALANLLDRTYKRRQALGGLNVGIDIMEGLRFTTQLNGNINYANGHFWTPTYTL 475

Query: 460  GTFGKNDKPDLEEKSSTWESWVLENTLNYDRTFG-KHNLSLLAGYSAQKDKSYSLYGKNG 518
            G+   ND  +L  K+     W    TL Y++TF  KH+L+L+  + AQ+    S+ G   
Sbjct: 476  GSV-TNDVNELTSKAENSFYWNWSQTLTYNKTFADKHDLTLMFTHEAQESNWESIEGSRQ 534

Query: 519  DMPQFIETMPGNVDPSNLKASSSLNELALVSLFGRVMYSFDDRYLFSASIRRDGSSRFRS 578
            +       + G         + + N+ A+ S  GR+ Y++DD+Y+  A++R DGS+ F  
Sbjct: 535  NFTSNDLPVLGLGSSQGATNAGNKNQWAMESYLGRINYTYDDKYIVLAALRADGSANFGP 594

Query: 579  GHQYGAFPSASIGWNINREKFFKPLENVFDQLKLRFSYGKLGNQEMTS--YYPTQSVVSD 636
             +++G FPS S  W ++ E F   +  V D+LK+R   G  GNQ   +  Y P  S    
Sbjct: 595  ENRWGYFPSVSAAWRVSEEDFMAGMA-VVDELKIRLETGLTGNQGSANAIYAPLSSPSVP 653

Query: 637  GMNYVMNNSPWFGSMPYVQAISPANLTWENTETYNIGLDVSLLNGRLTLTADAYVKNTND 696
                    +PW G     +  +P  L WE T+TYN+G ++++ N R+ +  D Y+K T++
Sbjct: 654  --------TPWGGGFLVTRYGNP-ELAWEETQTYNVGFNLNMFNNRVQVEGDFYMKRTDN 704

Query: 697  VLLPIP-----STASTGISGNSIQNAGQVRNKGFELAVNYRGAIKE--KFNYYIGANIAA 749
            +LLP P      T   G  G    N G + N+G+   +N          F +    N + 
Sbjct: 705  LLLPNPLPWYMGTEGEGSIGTPTVNIGSLENRGYAFTINTVNIDNRATSFRWSSNFNFSG 764

Query: 750  DKNEVTKITLGGQNLMISGYSAHGAGGRGINMFAEGHPMSYFNLIETDGLFRSAEEI--- 806
             K EVTK       +  + +  +    R +     G     F   + +G+F+S E+I   
Sbjct: 765  FKTEVTKFYSESAFIDRTAWYMNDFTQRAV----IGQSPWLFYGYQYEGIFQSVEDIEGS 820

Query: 807  ANYKNKDGELI---QPAAQVGDVRYKDWNGDGKINTDDQHDVGSPFPDFTFGIRLGGEWN 863
            A   + +GE +   +    VGD++Y+D NGD  I+  DQ  +G+P+P FTFG     E+ 
Sbjct: 821  AIPADNNGERLPIGEDDIWVGDIKYRDLNGDNIIDERDQTFIGNPWPKFTFGTTQTFEYK 880

Query: 864  NFDFNLFFDGMVGNKIYNYPRYRLESGNFNGNMSTVLANSW-----------RP--DNQN 910
             F  ++   G +G  ++NY R+   + N       +L  S+            P   N  
Sbjct: 881  GFKLDILLLGALGADVFNYARFNNTNPNNINLGRNLLVESFDYAKVETDSEGNPYLTNPG 940

Query: 911  TDIPRFSKTDGADNKWAYTDRWLEDGSYIRLKTLDIGYTLPK-VLTKKIKLENVRIYTSM 969
            TDIPR + TD   N    +D+++EDGSY+RLK +++ Y   K +L  +  +   R+   +
Sbjct: 941  TDIPRITVTDPNGNGTRISDKFVEDGSYVRLKNINLSYEFDKNLLGWQNVVRGARLSFGV 1000

Query: 970  ENLFTLTKYSGYTPDLGESSVAGVAYNVFSR----GIDQGRYPLPRTISFGIQVN 1020
            +NL T TKY GY P++G    A V  NV +     G+D GRYP  R  +F + ++
Sbjct: 1001 QNLATWTKYKGYDPEVG----AYVGNNVDAANQLIGVDYGRYPSTRMYNFSLGID 1051