Pairwise Alignments

Query, 1021 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1036 a.a., TonB-linked outer membrane protein, SusC/RagA family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  560 bits (1442), Expect = e-163
 Identities = 369/1061 (34%), Positives = 545/1061 (51%), Gaps = 69/1061 (6%)

Query: 1    MRRKIYFLLFFFLCLTSIPLA--AQDIEIKGMVTEATTNEPLPGVTVRVKGKDTGTVTDM 58
            M R+I   +FF  CL  +P+   AQ+ EI G VT  +  EPLPGV V ++G  TGT+TD+
Sbjct: 1    MERRI--TIFFISCLLLLPMLSYAQNNEITGNVTLKSNGEPLPGVAVMIEGSGTGTITDV 58

Query: 59   DGKYSIKANKGNILIFSTIGMKQIEKAVTSGTPINVSMEEDNIALEQVVVIGYGTVKKSH 118
            DGKYSI+A  G+ L+FS +GMK  +  +++ T +NV +EE+  ALE+VVV+GYG  KKS 
Sbjct: 59   DGKYSIQAPSGSTLVFSLLGMKPQKVTISNQTNLNVQLEENLSALEEVVVVGYGVQKKSV 118

Query: 119  LSGAVGSVSAKELNGQVASNAATALQGKIPGVSVASSSGDPNGSMTINVRGISSLSNNNP 178
            ++GA+ SV A +L     +    ALQG+  G+++ASSSG P    T+ VRG+++  NN+P
Sbjct: 119  VTGAISSVKASDLESMPINRVEQALQGRTSGLTIASSSGQPGSGATVRVRGLTTFGNNDP 178

Query: 179  LYVVDGAF---GDISMVDPNDISSIEVLKDAAAAAIYGSRAAGGVVLITTKSGRKDMPTK 235
            L+VVDG     G I  ++ +DI SIEVLKDAA+ AIYG+RAA GV+L+TTK G      +
Sbjct: 179  LWVVDGVVVDNGGIGYLNQSDIESIEVLKDAASQAIYGARAAAGVILVTTKKGEAG-KIR 237

Query: 236  LDVNFFTGVSQTPKTLKVFNGEEYSRFARYYKLAGDGYGAENGATPFIGEGTDWQDVML- 294
            ++ N + G S   K L + +  +Y+   R       G  A        G GTDWQD++  
Sbjct: 238  VNYNGYYGTSAPAKKLDLLDASQYA-MIRNEAATNAGNTAPFSNPASYGAGTDWQDLIFN 296

Query: 295  RTAMTYKANATISGGSKNGSYSSSVSYLNKEGILRN--TDHESYNIRLKSDYSFFDNRLT 352
             +A       +ISGG++  ++ +S  YL++EGI+ +  + ++  N RL S++    + L 
Sbjct: 297  NSAQRQNHELSISGGNEKSTFYTSFGYLDQEGIVASEISKYKRINFRLNSEHQ-LASWLK 355

Query: 353  IGESMIVNLTKGSGYIHQDTMF-----DIFQFPSVVP--VYDPTNAG------------- 392
            +G+++     K  G  + ++ F            + P  + DP  AG             
Sbjct: 356  VGQNLGYAHDKSIGLGNTNSEFGGPLSSAINLDPMTPAIISDPNIAGQPPYSTNPVIRDA 415

Query: 393  -----GWGTSNDINLPNPLAEMTVNDERTETTKIFL-NAYLQAEIIKGLKYKLNVGIRKE 446
                 G  T     + NPLA           +  F+ N Y +AE IKGLK +  +G +  
Sbjct: 416  MGRPYGISTIVAQEMTNPLAYTQTRLGNYSWSDNFVGNVYAEAEPIKGLKLRSTLGAKLS 475

Query: 447  HTKWRYYKDVYDLGTFGKNDKPDLEEKSSTWESWVLENTLNYDRTFGKHNLSLLAGYSAQ 506
            +     +  ++ L     +++ +     +    W LENT++Y +   +HN ++L G  A 
Sbjct: 476  YWGSESFTPIFYLNATTVSNQTNFTRNQNRRFDWNLENTISYSKAIDQHNFTVLLGQGAY 535

Query: 507  KDKS--------YSLYGKNGDMPQFIETMPGNVDPSNLKASSSLNELALVSLFGRVMYSF 558
             D          +++   N +       +P   D  N   S       + SLF R  Y++
Sbjct: 536  LDNRGRSATVTFFNVPANNFEDASLNFKVPN--DQRNADGSEGAGH-TVSSLFARANYNY 592

Query: 559  DDRYLFSASIRRDGSSRFRSGHQYGAFPSASIGWNINREKFFKPLENVFDQLKLRFSYGK 618
             ++YL  A +RRDGSSRF   ++YG FPS S GW I +E F+ P   V D LK+R  YG 
Sbjct: 593  TEKYLLEALVRRDGSSRFGPNNRYGIFPSFSAGWVITQEAFW-PTNPVVDFLKVRGGYGI 651

Query: 619  LGNQEMTSYYPTQSVVSDGMNYVMNNSPWFGSMPYVQAISPANLTWENTETYNIGLDVSL 678
            +GN  +   +   S +  G NY + N+  +       A S  +L WE T   NIG + +L
Sbjct: 652  VGNDNIGD-FAFLSTIGSGRNYTIGNTGSYVIGYSPNAPSNPDLKWEETSQANIGFEATL 710

Query: 679  LNGRLTLTADAYVKNTNDVLLPIPSTASTGISGNSIQNAGQVRNKGFELAVNYRGAIKEK 738
              G   +T D Y K T  +L         G   N   N   + N+G EL + YR  + E 
Sbjct: 711  F-GDFNITFDWYKKVTKGILQNPRIPGYVGAISNPAANVADMENRGVELELGYRKMLGE- 768

Query: 739  FNYYIGANIAADKNEVTKITLGGQNLMISGYSAHGAGGRGINMFAEGHPMSYFNLIETDG 798
                +  NI+  +NEVT   LG     +SG  +  A    I   A G  M+ F   +T G
Sbjct: 769  LELSLNGNISYLENEVT--NLGTDISYLSGGQSFQASSYPITRTAVGQSMNSFYGFQTQG 826

Query: 799  LFRSAEEIANYKNKDGELIQPAAQVGDVRYKDWNGDGKINTDDQHDVGSPFPDFTFGIRL 858
            +F++ E++ NY N DGE+IQP AQ GD  + D N DG+I   D+  +G+P P +++G   
Sbjct: 827  IFQTIEDVENYTNTDGEMIQPNAQPGDFIWADLNKDGQITEADRTFIGNPTPTWSYGFTA 886

Query: 859  GGEWNNFDFNLFFDGMVGNKIYNYPRYRLESGNFNGNMSTVLANSWRPDNQNTDIPRFSK 918
              +WNNFD   F  G+ GNKI+   R RL+    N N  T + N W     + D PR  +
Sbjct: 887  NFQWNNFDLVFFGQGVAGNKIFQGLR-RLDIS--NANWQTEVLNRWTGPGTSNDYPRIVE 943

Query: 919  TDGADNKWAYTDRWLEDGSYIRLKTLDIGYTLPKVLTKKIKLENVRIYTSMENLFTLTKY 978
             D   N    +D +LEDG Y R+KTL +GYTLPK L  K+ +   R+Y   ENL T TKY
Sbjct: 944  GDPNKNFNNPSDFYLEDGDYFRIKTLQLGYTLPKNLISKVAMNRARVYVMSENLATFTKY 1003

Query: 979  SGYTPDLGESSVAGVAYNVFSRGIDQGRYPLPRTISFGIQV 1019
            SGY P++G     GV        ID+G YP  R+   G+Q+
Sbjct: 1004 SGYDPEIG----GGV------MSIDRGIYPQARSYMLGVQI 1034