Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 198 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score =  102 bits (254), Expect = 4e-27
 Identities = 61/194 (31%), Positives = 108/194 (55%), Gaps = 15/194 (7%)

Query: 2   NERERVLAIKGGDHQAFIDLYNEYWSQVYDF-SRLYIATIADAEEIVQDVFVKLWESRHL 60
           +E+  ++ +KGG  QAF  LYN Y  ++Y+F  RL       AEE+VQ  F+++WE    
Sbjct: 6   DEKHLLIDLKGGSFQAFERLYNMYSGKLYNFIMRLSSGNQYMAEEVVQATFIRIWEVHEK 65

Query: 61  LKEDENIKGFLFIVTRNIVFNKNKKRV-----NENLFKTSVLVAYGNEGYYNSTTVEEDY 115
           +    +   FL  + +N++ N  +++      NE L K+SV            +  EE+ 
Sbjct: 66  VDPASSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLMKSSV---------DRDSQTEENI 116

Query: 116 CASQLKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLK 175
               L  +ID L   LP Q++K F+LS+ ++ + KEIAE +GIS+ TV   +  A+KF++
Sbjct: 117 DLRFLNEYIDSLAEELPAQRKKIFILSKRQNYTNKEIAEIMGISESTVATQLSLAVKFMR 176

Query: 176 DKVKRGWEILLSLL 189
           +++ + ++ +++LL
Sbjct: 177 EQLMKHYDKVITLL 190