Pairwise Alignments

Query, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 184 a.a., RNA polymerase sigma-70 factor from Bacteroides ovatus ATCC 8483

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 17  AFIDLYNEYWSQVYDFSRLYIATIADAEEIVQDVFVKLWESRHLLKEDENIKGFLFIVTR 76
           AF D YN  + +++  +  Y+     ++EIV DVF+KLW+ R  L +  NI+ + FI+ +
Sbjct: 21  AFRDFYNMTYDRLFRIAYYYVKQEEWSQEIVLDVFLKLWKQRSNLLDVRNIEDYCFILVK 80

Query: 77  NIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQLKIFIDRLINSLPEQQR 136
           N   N  +K           L     + Y    + EE   + +L     + ++ LPE+ R
Sbjct: 81  NASLNYLEKESKHTYIHPDSLPEPQEQSY----SPEESLISEELFALYVKALDRLPERCR 136

Query: 137 KCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVKR 180
           + F+  REE  SY ++AE LGIS  TV+  + KA+  LK+ + R
Sbjct: 137 EVFIRIREEKQSYTQVAEELGISMNTVDAQLQKAITRLKEMICR 180